Basic Information

Insect: Troides aeacus
Gene Symbol: -
Assembly: GCA_033220335.2
Location: CM067269.1:6916441-6922961[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.7e-06 0.00093 20.1 0.2 2 23 202 224 201 224 0.95

2 12 4.7 4.5e+02 2.3 0.2 5 23 233 251 232 251 0.92

3 12 0.0051 0.49 11.6 4.9 1 23 283 306 283 306 0.90

4 12 0.29 28 6.0 0.2 5 23 315 333 313 333 0.94

5 12 0.0027 0.26 12.4 0.3 3 23 341 361 339 361 0.96

6 12 7.3e-05 0.007 17.4 4.1 1 23 369 391 369 391 0.97

7 12 0.00013 0.013 16.6 0.7 1 23 400 423 400 423 0.97

8 12 0.0002 0.019 16.0 0.2 1 23 429 451 429 451 0.97

9 12 1e-06 9.5e-05 23.3 2.7 1 23 457 479 457 479 0.98

10 12 0.00036 0.035 15.2 0.6 1 23 484 506 484 506 0.97

11 12 3.9e-06 0.00037 21.4 3.8 1 23 512 534 512 534 0.97

12 12 0.00021 0.02 16.0 2.1 2 23 541 563 540 563 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.7e-06	0.00093	20.1	0.2	2	23	202	224	201	224	0.95
2	12	4.7	4.5e+02	2.3	0.2	5	23	233	251	232	251	0.92
3	12	0.0051	0.49	11.6	4.9	1	23	283	306	283	306	0.90
4	12	0.29	28	6.0	0.2	5	23	315	333	313	333	0.94
5	12	0.0027	0.26	12.4	0.3	3	23	341	361	339	361	0.96
6	12	7.3e-05	0.007	17.4	4.1	1	23	369	391	369	391	0.97
7	12	0.00013	0.013	16.6	0.7	1	23	400	423	400	423	0.97
8	12	0.0002	0.019	16.0	0.2	1	23	429	451	429	451	0.97
9	12	1e-06	9.5e-05	23.3	2.7	1	23	457	479	457	479	0.98
10	12	0.00036	0.035	15.2	0.6	1	23	484	506	484	506	0.97
11	12	3.9e-06	0.00037	21.4	3.8	1	23	512	534	512	534	0.97
12	12	0.00021	0.02	16.0	2.1	2	23	541	563	540	563	0.95

Sequence Information

Coding Sequence: ATGAATTTAAGAGAACTATGTCGGCTATGTGCAAAGGAAGACGAATTTACAAAAGACCTGTTACACGAAAGCAACCAGAATCTCCTGAAACTAATCAAAGAATTTGTGCATATTGTGattcatgataatgatgacttgCCTACTAAGATTTGCCTAAATTGTGAAGAAAAAATGGTTGACTTTCAATTGTTTGTACTGAAGTGTTGTAAAGTTCAAAAAACTTTAAAAGATATGTGTGGAGatgttgatataaaattagaagaTGTTGTGGGTATGGAAGTTTCTCAAATTAAATCTGAGGTGAAAGATGAATTGACACCAGAAGACTTTGTATGTGAAATTAATAATGGGGATACATTATTAGAATTCCAAAGAGATGAAGATTTAAATACTGAAAATGAGGAAGATAACGATAATTACGACAATGATGATGGGGAagattttgatgatgatgatgattacttagATGATGTTTCAATTGCATCATTgaaaaaaatgaaaaagaaacGATTAAAGAGAAAACCTTTGACAGAAGAAGAGGCAAATGAATTTCAAAAAGTATTGCAAAGTTCAAACTTTAAAGTTAAGGATATAGTTAAaTTAAAATGTGATGTTTGTGAAGAGTCTTTCAAGTCTTGGAGTGCTTTGCGTGTTCATTATGCAAGGAGTCATAAGAGCAAACCTTTAGTATTTTGCATTTGTGGGTTTATCATCAGATCAAAAAGTGTACTCTACAAACATGTATCAGATCACAAAATAGAAAGTAGAAAATTAAGGAAAGACACAGATAATGATAAACAAGAGGATACAAAATATGCAAGCCTgaatgttaaagattttataaaTTTTGTATGCAACAATTGTCAGAAGGAATGTTCAAGTTGGTATACTTTAAAAGCACACTGTCAAAGAGAGCACAAAATATTGCCCGTCGTCAATTGTGTTTGTGGTATAACACTGAAATCTAAATCGGTTCTTTATAAACATGTCCAAGATCATAAAAACCCTAATGTTTTGGCTTGCGATAAATGTCCGAGAATAACGAAAACAGTCGAAGCACtgaataaacataaaatgaGACATATACCCAAGTCAGAGAGGAGGTTTTGTTGTGCGTCATGTGACAAGACTTTCAACAGCAAGGACACTCTAAAGTCACACGAACGATCTCACATACCTATAGAAGAGAGAAAAATATTCCGATGTGATATGTGTGATTTGaagttCACAACTCGCTCGTCGGCCGCGTCACATAAACGTGTGGTTCACGACAAGATCAAAAGCTACGTGTGTGACCTGTGCGGATACGCGTGCGGCACCAACGGCGAGCTGCGTCAACACCGCGCCATACACAGCGACGACAAGCCTTTCGTCTGCAGGAAGTGTTCTAAGCCTTTCAAAACATATTCCAACTTAAAGACGCACATGGACACGCACGAGGACACGTCGTACGCATGCTATGTGTGCAACCGTGTACTTAACAGTCGCCGCACACTACGCAAGCACTTGCTTGTGCACGAGGACAAGTGCCGACACGTCTGTTCTTACTGCAACAAGGCCTTTAAACGCCGGCAAACCTTAAAGGTACACATGTACATGCACACGGGCGACAAGCCACTAACGTGCAAGTGGTGCGACGAGCGTTTCGCGTACGCGTCGACGTTGCGCTCGCACAGGTTACGCTGTCACGCCGACAAGATGGCCGCCCTCGCGCAGTCGCACGCGCCCTCGTACGACGCAATGACGCACACTATACATCACGAGTTTTTAAAAAGTGATTCGTCAGTGGGTCTAGCAAAAAATGAAGTGGAGGCTATATAA
Protein Sequence: MNLRELCRLCAKEDEFTKDLLHESNQNLLKLIKEFVHIVIHDNDDLPTKICLNCEEKMVDFQLFVLKCCKVQKTLKDMCGDVDIKLEDVVGMEVSQIKSEVKDELTPEDFVCEINNGDTLLEFQRDEDLNTENEEDNDNYDNDDGEDFDDDDDYLDDVSIASLKKMKKKRLKRKPLTEEEANEFQKVLQSSNFKVKDIVKLKCDVCEESFKSWSALRVHYARSHKSKPLVFCICGFIIRSKSVLYKHVSDHKIESRKLRKDTDNDKQEDTKYASLNVKDFINFVCNNCQKECSSWYTLKAHCQREHKILPVVNCVCGITLKSKSVLYKHVQDHKNPNVLACDKCPRITKTVEALNKHKMRHIPKSERRFCCASCDKTFNSKDTLKSHERSHIPIEERKIFRCDMCDLKFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKPFKTYSNLKTHMDTHEDTSYACYVCNRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYMHTGDKPLTCKWCDERFAYASTLRSHRLRCHADKMAALAQSHAPSYDAMTHTIHHEFLKSDSSVGLAKNEVEAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01402880;
90% Identity: iTF_00180675;
80% Identity: -