Basic Information

Insect: Troides aeacus
Gene Symbol: -
Assembly: GCA_033220335.2
Location: CM067285.1:4254439-4260038[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.014 1.3 10.2 2.5 3 19 32 48 31 51 0.92

2 13 0.0007 0.067 14.3 2.6 1 23 67 90 67 90 0.95

3 13 0.009 0.86 10.8 0.6 2 23 98 120 97 120 0.93

4 13 5.6e-05 0.0053 17.8 3.4 1 20 125 144 125 146 0.95

5 13 2e-07 2e-05 25.4 2.2 1 23 156 179 156 179 0.97

6 13 0.11 10 7.4 6.3 1 23 185 208 185 208 0.96

7 13 6.3e-05 0.0061 17.6 0.3 1 23 215 237 215 237 0.97

8 13 0.00012 0.012 16.7 0.2 1 23 242 264 242 264 0.99

9 13 8.8e-07 8.4e-05 23.4 2.2 1 23 270 292 270 292 0.98

10 13 2e-05 0.0019 19.2 0.1 1 23 295 317 295 317 0.98

11 13 0.028 2.7 9.3 0.2 5 23 329 350 324 350 0.81

12 13 0.00056 0.053 14.6 3.8 1 23 356 378 356 378 0.99

13 13 0.75 72 4.8 0.1 3 23 386 409 385 409 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.014	1.3	10.2	2.5	3	19	32	48	31	51	0.92
2	13	0.0007	0.067	14.3	2.6	1	23	67	90	67	90	0.95
3	13	0.009	0.86	10.8	0.6	2	23	98	120	97	120	0.93
4	13	5.6e-05	0.0053	17.8	3.4	1	20	125	144	125	146	0.95
5	13	2e-07	2e-05	25.4	2.2	1	23	156	179	156	179	0.97
6	13	0.11	10	7.4	6.3	1	23	185	208	185	208	0.96
7	13	6.3e-05	0.0061	17.6	0.3	1	23	215	237	215	237	0.97
8	13	0.00012	0.012	16.7	0.2	1	23	242	264	242	264	0.99
9	13	8.8e-07	8.4e-05	23.4	2.2	1	23	270	292	270	292	0.98
10	13	2e-05	0.0019	19.2	0.1	1	23	295	317	295	317	0.98
11	13	0.028	2.7	9.3	0.2	5	23	329	350	324	350	0.81
12	13	0.00056	0.053	14.6	3.8	1	23	356	378	356	378	0.99
13	13	0.75	72	4.8	0.1	3	23	386	409	385	409	0.83

Sequence Information

Coding Sequence: ATGCCGCCTAAAAGAAAGAAAGTTGGACGGCCTCCTGGCTCAAAAAACAAGAAAACTCTTGACGCGAAAAATGGGAAGATAAAAAATGTCGCTTGTGGGCTAtgtaataagaaattttatacaaaaaaaagtttgtgtGAACACAGCACAacatgtaaaagaaaattattaatgcaTACAGATGTTATTAAgGCTGCTTACAGTTGTAAACAATGTAACAAGAAATTTAGATTTGAGGAGAGTTACAAAATGCATTTAGAAAATGAACATTCCAAGGCACCAGGCAGTATTTCCTGTGAACTCTGTTCTGTAACCTGCCCCGATAAAGAAACATTAATGAAACATATTGATAACTATCATGAACGTGACATGTTTGTGTGTCCACACTGCAAGAAAGAATTTACAAGACATACTCATGTAATAAGACACATGACACAAAGGGGATGTGGTGGCAAAATTTCTTTATACACATGTGAAatctGTCACACATCTTTCACAAGAAAGGATAACTTAATGGTCCATTTGCGATTGCAACATATTGCTACTGACCATTTCAAATGTAAACAGTGTTCATACCATACCAAAAATTTTTCTAAACTTATCACTCACCGCTTTAGAATCCATTCAGAAAAGCCCCTCCATTTTGAATGTGATCATTGCGGGAAAACAACTAGTTCAAGAGCAGCAATCGCAAAGCATTTAGAAATACATGGACAGAAGAAATATAAATGTGATGTGTGTGGTTATGCAACCTTTACTTTGGAAGTTTTGCGCCGACATATATTGACTCATGTGGAAGATAAGCCACACAAATGCAATGAATGTGGCCGTTCGTACATCCAACGTATTCAACTCCAGAGACACATGGAACGGCACAATGGCTTCCAATGTGTAGACTGTGGACTCACTTTTGCCAATAAGGCtggGTTATTGATCCATAAAAGAGAGCATAAAgggttaaaaaaacttttatgtcCTATAGAAAAATGTTCTTTTTCATTGAAAGAATTCAGCAATGAAGCAAGCCTTCAAAAACATATAAAAGAACATTTGGAAGATAAACCTTACACATGTGAAGTGTGCTCGAAGCGTTTCCATAATGAGACTTACATGCGGAAACACGTGCTGACCCACACGCTGGAACGTCCGCGACGATGTATGTACTGCGTGGCGGCGCGCGCGTATGTTCGCGGCGAACAGCTCTTGCGCCACGTTCGCACACAGCATCGCGCCATCTTCCGAGACCACCTGACCCACGTGCGACAAGTGCTGggCTCCAATATTGGAACAGAGAGAGTTACAAAGTCTGAATTGGAGTCCATCCTAAACGTCTTGGATGCTGAATCGGAACGGATTATAGAAGGCTATGGAACAGGTGTTTTGTATGGCGGTATGATGGAGGTTGATAATGTCACTGATGACATGTCTGTCAAAGTAAATAATGACTGCAACCCACTGATGTCAGAAGAAGAGCTTACCGAGAGCCTGAAGAAATTACTAAGTCAGCTTATTGACAAGGAGACTTTAGAAATCTTCGGTTGGCCTGATGAATCTGTTGATGTGGTGTTAGAGAAGGTGATAGAGCATTGCGGCGCGCGGCCTGCCGATCGCGATAAGTGGACGCGAGTACAGCGCCTGCGCGAAAACACCAAGCACCTGTTTGTCTATGTGATCGACGATAAGAACATAGCTCGCATGTTAGACACGCACACAATCGATCAAatcataaaacatatattgGCACAAGTGGGAACCGTAGCCAACGGTACAACGATAAATAAGGAGTGA
Protein Sequence: MPPKRKKVGRPPGSKNKKTLDAKNGKIKNVACGLCNKKFYTKKSLCEHSTTCKRKLLMHTDVIKAAYSCKQCNKKFRFEESYKMHLENEHSKAPGSISCELCSVTCPDKETLMKHIDNYHERDMFVCPHCKKEFTRHTHVIRHMTQRGCGGKISLYTCEICHTSFTRKDNLMVHLRLQHIATDHFKCKQCSYHTKNFSKLITHRFRIHSEKPLHFECDHCGKTTSSRAAIAKHLEIHGQKKYKCDVCGYATFTLEVLRRHILTHVEDKPHKCNECGRSYIQRIQLQRHMERHNGFQCVDCGLTFANKAGLLIHKREHKGLKKLLCPIEKCSFSLKEFSNEASLQKHIKEHLEDKPYTCEVCSKRFHNETYMRKHVLTHTLERPRRCMYCVAARAYVRGEQLLRHVRTQHRAIFRDHLTHVRQVLGSNIGTERVTKSELESILNVLDAESERIIEGYGTGVLYGGMMEVDNVTDDMSVKVNNDCNPLMSEEELTESLKKLLSQLIDKETLEIFGWPDESVDVVLEKVIEHCGARPADRDKWTRVQRLRENTKHLFVYVIDDKNIARMLDTHTIDQIIKHILAQVGTVANGTTINKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01139711;
90% Identity: iTF_01495201;
80% Identity: iTF_01495201;