Taea017264.1
Basic Information
- Insect
- Troides aeacus
- Gene Symbol
- -
- Assembly
- GCA_033220335.2
- Location
- CM067286.1:7358146-7361646[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.7e-05 0.0055 17.7 0.2 1 23 120 143 120 143 0.98 2 12 0.0018 0.17 13.0 1.3 2 23 289 310 289 310 0.97 3 12 0.00025 0.024 15.7 6.1 1 23 321 343 321 343 0.98 4 12 0.001 0.099 13.8 2.2 1 23 351 374 351 374 0.94 5 12 7.4e-06 0.00071 20.5 1.7 1 23 380 402 380 402 0.98 6 12 3.3e-05 0.0031 18.5 2.1 1 23 408 430 408 430 0.98 7 12 7.8e-07 7.5e-05 23.6 0.6 1 23 436 458 436 458 0.95 8 12 1.1e-05 0.0011 19.9 0.6 1 23 464 486 464 486 0.98 9 12 8.9e-07 8.5e-05 23.4 0.3 1 23 492 514 492 514 0.98 10 12 0.00022 0.021 15.9 0.6 1 23 520 542 520 542 0.98 11 12 6.2e-05 0.0059 17.6 3.4 1 21 548 568 548 570 0.96 12 12 9.9e-06 0.00094 20.1 0.1 1 23 576 598 576 598 0.98
Sequence Information
- Coding Sequence
- ATGGATTTTACagtaaatattgataaagtAGATATTGTGTGTAGGATATGTCTTGGCGAGGGATCAAATATGAGAATGTTAATGAGTAAAATGGAAAGTGATGATAGGACAATAGCAGAAGCTCTTTcgtttatattaaatctttacATTTCTGTGAGTGATACATATGCAAAACAAGTTTGTGAAGAGTGTCATGGGAATATCCTCAAGTTTGATGAATTCAAAAAGCGCTGCATACAGGCAGAAGGTTCGTTGAACGATGCTTATTATACAGAAAGTAAAGCTGAATGTTCTGATAACCACAGTACTAAATCCATTAAGGAAGAATCtattaacaaattttgtatGGATGAACCTTATCAATGTAGCGTGTGTTCAAAGAAATTTTCTGATTTACTCCTTCTTGAGTCACATGTATTAACTGGTCACAGTTTTGCTAATGAACCAACAGTAAAAAACGTGGCGTTATCAGAAGACTTTACACGTTCACCAAATTTTCCTAAAAACACAACTCTCTTCactaataatgttataataagtgataatgaTACAAATGATTTCCAAGACAAAAAAGATGAAGCACAAAATGATGAAGAATATGAGTTTGCAGAAAGTGGAGCTGAATTATCAAGTCCATTAATGGATAATAAAGATGATGAGGAGCTCTTAGATAAGCACAcatctgtaaatatatttaagtgtaaATGTGGGTCTATTTATGACAACTACACCACATATAAGGAACACttagaagaaaataaatgtGAGGAGATTGTcaatgatgatataaacagtaCAAATGAGAAAAAATCTCTTAAAAAAAGATCTGTAAGAAGGAAAAAGAAAGTATCTGTAGAAAAACCAGTATGTCAAAAATGTGGCATTGAATTCAATACATTAAAAAGGTATACAATGCACCTGCGTAAACATAGATTTGAGAACATTGACCCctcggaagtatttcactgtTCGATGTGTATGAGAAGATTCACTAGAAAGTCATCTCTCACTACACATTTGAAAACACATGAAATAAAAGCTGGaataaagtatatttgtaaaacatGTAAGAGAGAATTCCAGCATCAGGCACATTTAGATAACCACATATTAGCAGTGCACACAAGAGAAACTGGCTACACATGTAAGTATTGTTCAAAGAACTTTGCCAAACAGGAGAGTTTAGAGAACCACCAGGATTCACATAAAATAGAAAAACGACACCGGTGCAATGTTTGTAGTAAAGCATTTTACATGGTGTCAACATTAAGAGATCACATACGCACCCACACAGGAGAGAAGCCTTATCTGTGCTCAGCATGTGGCAAGGGATTCAGTCAAAAGAATAATTTGGCGCAACACATGAGGAGGCATCAAGGTCTGAAACCATTTAAGTGTGATAATTGTGATCAAAGGTTCGTTTCAAAGGGCGAGCTGGTTGCCCACAACCGTAAGCACAGCGGCGCACATCCGTTCGTCTGCGACGAATGCGGCAACGGCTTCACAACGTCCAGCTCGCTGGTGAAACATCGCCGCATACACACCGGCGAGAGACCTTACGCCTGTGACCTGTGCACGATGAAATTCACGGCTTCCGGGACCCTGAAGAACCATCGGCGGATTCACACCGGTGAGAAGCCTTACCAGTGCTCTCATTGCGAGAAGGCTTTCGTCCAGCGTCAAGACTTGATCTCGCACATTCGCTGCCACACCGGGGAGCGACCGTTCGTGTGTCCCAACTGTGGACAAGCTTTCCGCAAGGCCGCTGCTCTGAAGGGTCACCGCAAAATGCACGCGAAAGAATCTATACCGATGCAGAAGGACGTCGGCCTCTCCGTCTTACACGGCGTCAACGCGCTGCTCAGCGGAGTTCACGATCTCATTAGCGGATAA
- Protein Sequence
- MDFTVNIDKVDIVCRICLGEGSNMRMLMSKMESDDRTIAEALSFILNLYISVSDTYAKQVCEECHGNILKFDEFKKRCIQAEGSLNDAYYTESKAECSDNHSTKSIKEESINKFCMDEPYQCSVCSKKFSDLLLLESHVLTGHSFANEPTVKNVALSEDFTRSPNFPKNTTLFTNNVIISDNDTNDFQDKKDEAQNDEEYEFAESGAELSSPLMDNKDDEELLDKHTSVNIFKCKCGSIYDNYTTYKEHLEENKCEEIVNDDINSTNEKKSLKKRSVRRKKKVSVEKPVCQKCGIEFNTLKRYTMHLRKHRFENIDPSEVFHCSMCMRRFTRKSSLTTHLKTHEIKAGIKYICKTCKREFQHQAHLDNHILAVHTRETGYTCKYCSKNFAKQESLENHQDSHKIEKRHRCNVCSKAFYMVSTLRDHIRTHTGEKPYLCSACGKGFSQKNNLAQHMRRHQGLKPFKCDNCDQRFVSKGELVAHNRKHSGAHPFVCDECGNGFTTSSSLVKHRRIHTGERPYACDLCTMKFTASGTLKNHRRIHTGEKPYQCSHCEKAFVQRQDLISHIRCHTGERPFVCPNCGQAFRKAAALKGHRKMHAKESIPMQKDVGLSVLHGVNALLSGVHDLISG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00197528;
- 90% Identity
- iTF_00249866; iTF_01115856; iTF_01495194; iTF_01495932;
- 80% Identity
- -