Basic Information

Insect: Troides aeacus
Gene Symbol: -
Assembly: GCA_033220335.2
Location: CM067281.1:2256482-2262571[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00036 0.034 15.2 4.4 1 23 137 159 137 159 0.99

2 11 3.1e-06 0.00029 21.7 1.5 1 23 200 222 200 222 0.99

3 11 5.8e-07 5.5e-05 24.0 1.1 1 23 235 257 235 257 0.98

4 11 2.1e-06 0.0002 22.3 1.9 1 23 263 285 263 285 0.97

5 11 0.00027 0.025 15.6 4.8 1 23 291 313 291 313 0.97

6 11 1.9e-08 1.8e-06 28.7 1.2 1 23 319 341 319 341 0.96

7 11 6.8e-05 0.0065 17.5 3.6 1 23 347 369 347 369 0.98

8 11 3.1e-05 0.003 18.6 1.5 1 23 375 397 375 397 0.96

9 11 5.6e-05 0.0053 17.8 7.3 1 23 403 425 403 425 0.97

10 11 1.7e-06 0.00017 22.5 2.8 1 23 431 453 431 453 0.98

11 11 0.002 0.19 12.8 1.7 1 22 459 480 459 481 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00036	0.034	15.2	4.4	1	23	137	159	137	159	0.99
2	11	3.1e-06	0.00029	21.7	1.5	1	23	200	222	200	222	0.99
3	11	5.8e-07	5.5e-05	24.0	1.1	1	23	235	257	235	257	0.98
4	11	2.1e-06	0.0002	22.3	1.9	1	23	263	285	263	285	0.97
5	11	0.00027	0.025	15.6	4.8	1	23	291	313	291	313	0.97
6	11	1.9e-08	1.8e-06	28.7	1.2	1	23	319	341	319	341	0.96
7	11	6.8e-05	0.0065	17.5	3.6	1	23	347	369	347	369	0.98
8	11	3.1e-05	0.003	18.6	1.5	1	23	375	397	375	397	0.96
9	11	5.6e-05	0.0053	17.8	7.3	1	23	403	425	403	425	0.97
10	11	1.7e-06	0.00017	22.5	2.8	1	23	431	453	431	453	0.98
11	11	0.002	0.19	12.8	1.7	1	22	459	480	459	481	0.92

Sequence Information

Coding Sequence: atGGTGAACTTAGACACGACTTGTCGGACATGTATGAAAAACAATGGAAATCTCATTAATTTGTTTGGGCCTATAAAGCTTGAGGAAAATTATAATATGCTTTTAGCTGATGCTTTAGCCTTGATAACATCATGTCAGGTTATGAGAAATGATGGAATGCCACAAAATATTTGCAGTGAATGTGTCAATATTCTACAAGTTGTGATGACATTTCGTTCTACCACCTTAAAAGCTGAAGAGAACCTAAAAAAGTTAATCTCCCTCACAAGTTCACTTAAGGAGGAAGTTAAAGATGAAGTTCAAACTGATGAAGAAACAAGCTCAACAGAACAAAGTTATGACACAATAGAAATTTGTCCATTAGAATCTTTACTCCCTAAAGTTGAAACATTACCTGAAAATGATATCTACCAGTGTGATAAgtgtaaaaaaagttatactaactacaaaagatatttaaatcaCCTACAGACACATGGGGATGCCTctctaaaaaaacaaatacctgAGATTAAATTAGAGGCAAATTTTTCCAATAGTATAAGCAAAATATTAGacgaaacaaatattttgaacatagcattagaagtaaaaaaatataaatgtaatgaatgtgatcaatcatttaataaagaaagatCTCTTGTAGCACACAGAAGAAAACATagaaattatgataataaaaaaggagACAATCTCAAGTTTGAATGTGATTATTGTGGAAAAGATTTTTCTAAGAAGCCACTGTTAAAAAGACATTTAAAGTTGCATTCAATGAATAGACCATTTGCATGCAAACATTGTCCAAAGAGTTATACAAGACAAGATCAACTCATAGAGCATGCTAAGAGACATGATAGAGTTAAATCACATGTGTGCTCATATTGCAATAAAGGGTTCTTCCAGTTGTGCAGTTTGAAGGATCATCTCCGAGTTCATACAAAGGAAGCTCCATACTTATGTTCTCTATGCGGCAAAAGTTTCTCTAACAATTCCAATCTACGCCAACATATGATTAGGCATTCTGGAGTGAAGCCTTTTACATGTACTTTCTGCCCGAAAACATTTTGCACTAAaggACAGATGGTGAGCCACCAAGTGACCCACACGGGCGCCCATCCACACAAGTGCGACGAGTGCGGCGCTGCCTTCACCAAACCCAACTCCCTTAAGAAACACAAATTCATCCATCTTGACGTCAAAGCGTTCGCGTGCGAGACCTGCGGTAAGAGATTCACCTGTAAGGACCACCTGAAGCGGCACTACCGCACCCACACGGGAGAGAAGCCCTACCACTGCAAATACTGCGATCGAGCTTTCACGCAGAGCAACGACGTGGTGAAGCACATGCGCATGCACGTCGGACAGAATATATACCAgtgtACAGTTTGCAATATGAAGTTTAGACTGATGAGGGACCTGAAGAAGCATTATCCGACGCACTACGTCAAGGGCACCAAGGCGCCGGTGGTGCCTGTCGGCAACGGCATGGTTGCCCCCATCATCGTGGCTTCAGAAGAATCCGATGCAGTTTGTGATAATACAGTTAACCAAAGCGCAGACAGTAGAATAACAATTACAGTTAACAACGGCTTCAGAGACGGTTTGGCTGgtggtattattattaatgtggCACCACAGAACGGTGCTGATGGCTAA
Protein Sequence: MVNLDTTCRTCMKNNGNLINLFGPIKLEENYNMLLADALALITSCQVMRNDGMPQNICSECVNILQVVMTFRSTTLKAEENLKKLISLTSSLKEEVKDEVQTDEETSSTEQSYDTIEICPLESLLPKVETLPENDIYQCDKCKKSYTNYKRYLNHLQTHGDASLKKQIPEIKLEANFSNSISKILDETNILNIALEVKKYKCNECDQSFNKERSLVAHRRKHRNYDNKKGDNLKFECDYCGKDFSKKPLLKRHLKLHSMNRPFACKHCPKSYTRQDQLIEHAKRHDRVKSHVCSYCNKGFFQLCSLKDHLRVHTKEAPYLCSLCGKSFSNNSNLRQHMIRHSGVKPFTCTFCPKTFCTKGQMVSHQVTHTGAHPHKCDECGAAFTKPNSLKKHKFIHLDVKAFACETCGKRFTCKDHLKRHYRTHTGEKPYHCKYCDRAFTQSNDVVKHMRMHVGQNIYQCTVCNMKFRLMRDLKKHYPTHYVKGTKAPVVPVGNGMVAPIIVASEESDAVCDNTVNQSADSRITITVNNGFRDGLAGGIIINVAPQNGADG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01130188;
90% Identity: iTF_01495931;
80% Identity: -