Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.056 1.2e+02 3.4 0.0 11 43 78 109 70 110 0.66

2 6 0.00098 2.1 9.0 0.2 17 43 134 157 125 158 0.78

3 6 0.065 1.4e+02 3.2 0.2 13 26 175 188 170 203 0.85

4 6 1.3e-05 0.028 15.1 0.7 17 43 205 228 193 229 0.91

5 6 0.38 8.3e+02 0.8 0.8 14 25 231 242 229 262 0.87

6 6 0.00065 1.4 9.6 3.6 18 40 321 340 306 342 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.056	1.2e+02	3.4	0.0	11	43	78	109	70	110	0.66
2	6	0.00098	2.1	9.0	0.2	17	43	134	157	125	158	0.78
3	6	0.065	1.4e+02	3.2	0.2	13	26	175	188	170	203	0.85
4	6	1.3e-05	0.028	15.1	0.7	17	43	205	228	193	229	0.91
5	6	0.38	8.3e+02	0.8	0.8	14	25	231	242	229	262	0.87
6	6	0.00065	1.4	9.6	3.6	18	40	321	340	306	342	0.79

Coding Sequence: ATGGTCGAAGACCACAAGAAGTTAACTCCAACCATTCCATCTGATAATATGAATGTTGATCTTGAACTCGACGCTTTCCAAATAACTGCTGATGATTTGAAGACAAACCGAGACGTGGATGATTCAAACTTGAACAGTAGAACGTGGTACaaagagttttctttttttttagaggAGTCGGATCCCGTGAGGAGGAACGCGGAGTTGATCATAAAGTATACCACAGCGAGTCCCTTCCGATTGAACGGGAGGAACGTTTTGTGCGTGTACTGCGGGGATACTTTCGAGGACCCGGACGACTTTCGAGCTCACATGCTACACGAGCACAAAACTTTCAGGGTGAACATGGCATTCGCTAAGCTGCCCAAATGTGAATCTGTGAAGGTCGATATCAAGGAGTTGCGCTGCAGGATTTGTCGGAAAGAATTCAAGAGTCTTAACTATGTGGCCAATCATTTGAAGGAAGCGCATTCGAAGAACATCTCTACAGATTTAGCTCTGGGCGTGATGCCATATGTACTAAACAAGCAGAGTTGGGATTGTGCAGTCTGCAGCAAAAACTTACCATCTATCCTGCATCTGAACAAGCACACGGTGACTCACTTCCTGAGTTTCGTGTGCGACATTTGCGGCAGGAGTTACATCGCCTCCACCGGCTTACTAACCCACCTCAGGTCCAAACATGAGTCCGAATACAAAGCTTATTGCAAACGCTGTCGGGTGATATTCCCCTCGATGAAGGCCAAGCAGATGCACCAGAGGACCGAGAAGCGCTGCATGACGCACTGCTGCACCGAGTGCCCGGAGAGGTTCCCCAGCTACGAGTACAAGCAGAGGCACATGGTCGTTATTCACGGGATGATGAGGAAGGAGTACTCTTGCATGCGGTGCCCGTTGAGCTTCAGCTGCCGTCAGACCTATTACGACCACTTCAAAATGTCGCACTCGGCCGACTGCGACGTCTGCATGCACTGCGGCAAGAAGTTCGCAAGTGGTTACAAGTTAAAGAGGCACATGAAAAACCATGCCATTTAG
Protein Sequence: MVEDHKKLTPTIPSDNMNVDLELDAFQITADDLKTNRDVDDSNLNSRTWYKEFSFFLEESDPVRRNAELIIKYTTASPFRLNGRNVLCVYCGDTFEDPDDFRAHMLHEHKTFRVNMAFAKLPKCESVKVDIKELRCRICRKEFKSLNYVANHLKEAHSKNISTDLALGVMPYVLNKQSWDCAVCSKNLPSILHLNKHTVTHFLSFVCDICGRSYIASTGLLTHLRSKHESEYKAYCKRCRVIFPSMKAKQMHQRTEKRCMTHCCTECPERFPSYEYKQRHMVVIHGMMRKEYSCMRCPLSFSCRQTYYDHFKMSHSADCDVCMHCGKKFASGYKLKRHMKNHAI

Sequence clustering based on sequence similarity using MMseqs2