Basic Information

Insect: Trissolcus japonicus
Gene Symbol: Prdm1
Assembly: GCA_030522925.1
Location: JAPYZS010000188.1:145162-148658[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.2e-05 0.0024 18.8 2.5 1 23 719 741 719 741 0.99

2 5 6.5e-06 0.00071 20.5 5.1 1 23 747 769 747 769 0.98

3 5 1.3e-06 0.00014 22.7 4.2 1 23 775 797 775 797 0.98

4 5 0.00051 0.056 14.5 2.4 1 23 803 825 803 825 0.97

5 5 5.7e-05 0.0062 17.5 0.2 1 22 831 852 831 852 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.2e-05	0.0024	18.8	2.5	1	23	719	741	719	741	0.99
2	5	6.5e-06	0.00071	20.5	5.1	1	23	747	769	747	769	0.98
3	5	1.3e-06	0.00014	22.7	4.2	1	23	775	797	775	797	0.98
4	5	0.00051	0.056	14.5	2.4	1	23	803	825	803	825	0.97
5	5	5.7e-05	0.0062	17.5	0.2	1	22	831	852	831	852	0.96

Sequence Information

Coding Sequence: ATGGAGGCTAGTGAATGGGATCACACCACGTTGAGGGAGGAGGAATTCGAGAAACACGCGGTGTATCTGGTACCGGATGTGGTACCATCACCAAACGAGATCAACCGGGCGGAAGCGTCTCTACCGAGGAACCTGGTTCTTAAACAATCCCAAGCAGTCAACGATTCGCAAGGAGTTTGGAGTACGAGTTACATCCCAAAAGGAACGCGGTTCGGACCTCTGGTTGGACAAATTTACCCCAAAGACTCGGTACCTCCTAACGTGAGCAGAAATTTCTTCTGGAGGATATACCAAGATGAGGAACGATACTACTTCATCGACGGTTACGATGTTCGGAAGGCGAATTGGATGCGATACGTTAACCCTGCATACTCATCTGAAGCACAGAACTTGATTGCTTGCCAGTATGAGatgaaaatatatttttacacaatCAAACCAATCCTACCAAACCAGGAACTCTTGGTCTGGTATTGCAAGGAATTCGCAGAACGACTCCACTACCCCGTCACAGGAGAATTAATGCTACAAAGAATAATGCAACAATCGAGTCTACCAAGTGAGATCCCTGCATCCGTCGAAGTGGTCTCTAGTTTAAAAGACAGCACCATCTACGAGAGGCGTTCTCAGATGACACCCACCGACGGTTCCGTTCGATCGGACGAAGGTTACCACTCGAACGGCTATCACGACGAGATTCTGACGCCACCCGAGGAGAGCAGCGAGAGTGACTCGGAGAACAACTACGTCTTGGACTTCAGCAAGAACGCCAAGACCATAGAATCGACGGTCGAGAAGGAGGACACCGCGGCGAAAAACGAGTACCGCAAggtcaaaatcaaaatcaacaaGACTTATGGCAACTTCCAACCTAGCAAGACTCTGGACAGCGCGAAGGAGAAGGAGGACCAGGTGTCAAGTCGGGCAGTGTCGCCGGAAGTGCAGCAGCAGAAGCCCATGTCACCTGTGATAGTTCTGCAGAAGAACACGGTTCTCTCTTCGACCGAGGACTGTGAGGTGTCCTCGGAGAAGGTCAAGTTTTACGAAGCCGACACGAAGGTGAACTCGGCCCCGACCACGAGGCCCTACATAACCAACACTAGCAGCTCAATCCTCGAGAACATCCTGCTGAGGAGCACggacaacaacaacaacaacaaccaTAGCAATAATCATCAGCAGACGGTGAACAGCAGCAGTCACATCCACCATCACCAGTCGAGCCTCCCCTCGAAGATTGTGAACGGACACGCCGATTCCGTTTCGCCGCCTCCCTCAAGTCCTACCGAGATGGCTTACTCGTACAAGAAGTCCCACCGTTACAGCAATATGCTGCCCTGCAGCCCCGACTCCAGCTCGAACCTTCAGGTTCACGCGGACACAGTGACGTCGAGTCTGAGTCCACCGACCAACATCAGTCAACACCTCGCAAGCCCCACGCCCACGTTGCACTCCAGTACGGGGAACCTCCACTCGAGCACGGGAAACAACAACTTACTGCACGCATGCACCGGGACCATACACTCGAGCACGGCCAGCCCCAATCTGCACAGCAGCGGGATCATCTCTCCAGGCTGTCTGAGTAAGAGGGAAACCAAGAGCCCGTCGTCGAGCATACCCTCGACCAGTGTAGCCTCCACCATCCACTACTCGAGTTCGAACTCGCAGCACATCGAGTCGAGCTCGTCGTACCACCAGTCCAACAACCAGAACGTCTCACCGATTCAGTCGCCCTCTTCGTACCCGTACAGCTTGTACCATCAAAACGGCTCGCTGCACCACAGCGTTGCCCCTCTGACCATCAACTGTGCCGCGTACTCGCCCACTCCGACCACCAGTGCCGTCTACGAGCGAGCCAATGACCGAAGACTCGAGCCCACTAGCAGCAGCCACCAGCTGCCCACCTCTTCCACGATGCAGCTTGATAACAACCAGGCGCTCATCACCGGGACGCACAACCTTCACCTGGGTCACTACCCGGGCCTCACCATCCACGCGAACTCGTCCAGCCTGAACAGATACTCGCCTGCGAGCTCGCTCTCACCGGACGATCACGGGTGCTCGCAAAGTGGCTCGCTCAGTCCCAACTCGCAGGGATCTCGGGGTTACAGGTCTTTGCCGTACCCGCTTAAGAAGAAGGACGGCAAGATGCATTATGAGTGCAATGTCTGTTGCAAGACCTTCGGACAACTGTCCAATCTGAAGGTTCATCTTCGAACGCACTCGGGTGAGCGACCATTCAAGTGTAACGTATGCACCAAGAGCTTCACGCAACTGGCTCATCTGCAAAAACATCATTTGGTTCATACTGGAGAGAAACCCCACCAGTGCGAGATCTGTAAGAAGAGGTTCAGCTCGACGTCGAACCTGAAGACCCACTTGAGACTGCATTCCGGACAAAAGCCCTACGCGTGTGACTTGTGCCCGACCAAGTTCACACAGTTTGTGCACCTCAAGCTGCACAAGAGGCTGCACACGAACGAGCGGCCTTACACGTGCCAGGGCTGCGACAAAAAGTACATCAGCGCCAGCGGCCTCCGAACCCACTGGAAGACCACCAGCTGCAGGCCTAACAATATCGAGGACGAGCTCGCTCTGGCGACCTCTGTCAAGTCTCCGACGTACTATGAGTACACGCCTGACATGAATGTTGgTAACATGCAGAAGGACTGCGACCTGGACCAGCACATCGACAACTACGAGAGGCGCGGTGGTTCCCACACGCCTCACACAACGTCGCTGCACAATCTGGAAAATTCCGTTGGCAGGCCGAGCGTGATCGAGACGTCGCAGCCGCACATCATCGAGTGCACCTAA
Protein Sequence: MEASEWDHTTLREEEFEKHAVYLVPDVVPSPNEINRAEASLPRNLVLKQSQAVNDSQGVWSTSYIPKGTRFGPLVGQIYPKDSVPPNVSRNFFWRIYQDEERYYFIDGYDVRKANWMRYVNPAYSSEAQNLIACQYEMKIYFYTIKPILPNQELLVWYCKEFAERLHYPVTGELMLQRIMQQSSLPSEIPASVEVVSSLKDSTIYERRSQMTPTDGSVRSDEGYHSNGYHDEILTPPEESSESDSENNYVLDFSKNAKTIESTVEKEDTAAKNEYRKVKIKINKTYGNFQPSKTLDSAKEKEDQVSSRAVSPEVQQQKPMSPVIVLQKNTVLSSTEDCEVSSEKVKFYEADTKVNSAPTTRPYITNTSSSILENILLRSTDNNNNNNHSNNHQQTVNSSSHIHHHQSSLPSKIVNGHADSVSPPPSSPTEMAYSYKKSHRYSNMLPCSPDSSSNLQVHADTVTSSLSPPTNISQHLASPTPTLHSSTGNLHSSTGNNNLLHACTGTIHSSTASPNLHSSGIISPGCLSKRETKSPSSSIPSTSVASTIHYSSSNSQHIESSSSYHQSNNQNVSPIQSPSSYPYSLYHQNGSLHHSVAPLTINCAAYSPTPTTSAVYERANDRRLEPTSSSHQLPTSSTMQLDNNQALITGTHNLHLGHYPGLTIHANSSSLNRYSPASSLSPDDHGCSQSGSLSPNSQGSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCEICKKRFSSTSNLKTHLRLHSGQKPYACDLCPTKFTQFVHLKLHKRLHTNERPYTCQGCDKKYISASGLRTHWKTTSCRPNNIEDELALATSVKSPTYYEYTPDMNVGNMQKDCDLDQHIDNYERRGGSHTPHTTSLHNLENSVGRPSVIETSQPHIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01493158;
90% Identity: iTF_01493158;
80% Identity: -