Basic Information

Insect: Trissolcus japonicus
Gene Symbol: -
Assembly: GCA_030522925.1
Location: JAPYZS010000112.1:529292-530599[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.024 2.7 9.2 0.4 1 23 7 31 7 31 0.98

2 9 5.4e-06 0.00059 20.7 4.4 1 23 37 61 37 61 0.98

3 9 0.0002 0.021 15.8 8.1 1 23 68 90 68 91 0.90

4 9 0.04 4.4 8.5 1.2 2 23 97 118 96 118 0.95

5 9 5.2e-06 0.00057 20.8 0.9 1 23 136 158 136 158 0.98

6 9 0.00012 0.014 16.4 1.8 1 23 163 186 163 186 0.97

7 9 4.7 5.2e+02 2.0 0.9 1 10 190 199 190 207 0.76

8 9 4.6e-05 0.0051 17.8 3.7 1 23 221 246 221 246 0.97

9 9 0.0007 0.077 14.1 0.2 1 23 251 274 251 274 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.024	2.7	9.2	0.4	1	23	7	31	7	31	0.98
2	9	5.4e-06	0.00059	20.7	4.4	1	23	37	61	37	61	0.98
3	9	0.0002	0.021	15.8	8.1	1	23	68	90	68	91	0.90
4	9	0.04	4.4	8.5	1.2	2	23	97	118	96	118	0.95
5	9	5.2e-06	0.00057	20.8	0.9	1	23	136	158	136	158	0.98
6	9	0.00012	0.014	16.4	1.8	1	23	163	186	163	186	0.97
7	9	4.7	5.2e+02	2.0	0.9	1	10	190	199	190	207	0.76
8	9	4.6e-05	0.0051	17.8	3.7	1	23	221	246	221	246	0.97
9	9	0.0007	0.077	14.1	0.2	1	23	251	274	251	274	0.95

Sequence Information

Coding Sequence: ATGGATTCGAAGAAAAAGTACGAGTGTACGTTTGAAGGTTGTACGGCAAAATTTTTGAGGCCTTCGAGGTTACTTTGGCACACGAGAAGTCATACTGGAGAgaaaccTTTTAAgtgtacttttcaaaattgtaacaaagcTTACACAAATTCCTCTCACTTGAAAAGGCACTTGGAAAGTCACaagaagatacaaaaattatatttgtGTCCGATTTGTCAGAAGACATTTACACAATATCACAACTTGAAACGACACTGCCTGAAACACCACGACGATAAAAGAATGTACTGCACAGAATGTAACAAGTGGTTTAACAAACAGGAGACTTTTGACGCTCACAAAACAATGcataaagaattaaaaaaatccaaatcaaaggaaaatgttgattttgccAGAAGTTATCAGTGTTTACTGTGTGGCAAAACGTTCGCCACTATCAACAAGttgaataaacataaaaatgttcataaactCGCTCACTACACTTGTTTAGAATGTGAGAAGAATTTTGAAGACCGGGAAGATTTCTGTGACcatctgaaaattaatcacaGAAAGGatcatgTATGCGAAACTTGTAACCGTTTCTActtgaagaaagaaaattacttTCGTTATCATAATGTCTgcaaaaagaaagatgaaGCTAAAACGTTTTCGTGTCCTTATGACCACTGcgatcgaatttattttcacaagagaaatttgaaatcacacatcCGGATTATCCATCGGAAAGAGAATTATACGTGTGATTACTGTGATGCTGAATACAATGCAAAATTTGCTTTGAGGAGGCACGTACTCAACGTTCACATCTACGAAGGACAGCAACCAATGAAGACGCCAAAGTCCCGAAAAAAGAGGAAAGATGCTGGGATCCCAAAAAAGAGCGAGATCTCTAAACTGGTTGGAGTCGACTTTCCGCCAGATTTTGATAAGGAGCTTATGAATCACGAGAGAAAGCTGGTACAATCTCATAATATAACTCATGACAAAAACTGA
Protein Sequence: MDSKKKYECTFEGCTAKFLRPSRLLWHTRSHTGEKPFKCTFQNCNKAYTNSSHLKRHLESHKKIQKLYLCPICQKTFTQYHNLKRHCLKHHDDKRMYCTECNKWFNKQETFDAHKTMHKELKKSKSKENVDFARSYQCLLCGKTFATINKLNKHKNVHKLAHYTCLECEKNFEDREDFCDHLKINHRKDHVCETCNRFYLKKENYFRYHNVCKKKDEAKTFSCPYDHCDRIYFHKRNLKSHIRIIHRKENYTCDYCDAEYNAKFALRRHVLNVHIYEGQQPMKTPKSRKKRKDAGIPKKSEISKLVGVDFPPDFDKELMNHERKLVQSHNITHDKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -