Basic Information

Insect: Trissolcus japonicus
Gene Symbol: -
Assembly: GCA_030522925.1
Location: JAPYZS010000046.1:228415-233103[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 8.6e-05 0.0094 17.0 0.2 1 23 350 373 350 373 0.98

2 8 1.5e-05 0.0017 19.3 4.7 1 23 388 410 388 410 0.98

3 8 0.00032 0.035 15.1 2.6 1 23 439 461 439 461 0.98

4 8 0.0065 0.71 11.0 5.1 1 23 469 491 469 491 0.98

5 8 0.00026 0.029 15.4 0.2 1 23 517 539 517 539 0.97

6 8 7.3e-06 0.00079 20.3 0.8 2 23 545 566 544 566 0.97

7 8 5.3e-07 5.8e-05 23.9 0.7 1 23 572 594 572 594 0.95

8 8 0.00024 0.026 15.6 1.0 1 23 600 622 600 622 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	8.6e-05	0.0094	17.0	0.2	1	23	350	373	350	373	0.98
2	8	1.5e-05	0.0017	19.3	4.7	1	23	388	410	388	410	0.98
3	8	0.00032	0.035	15.1	2.6	1	23	439	461	439	461	0.98
4	8	0.0065	0.71	11.0	5.1	1	23	469	491	469	491	0.98
5	8	0.00026	0.029	15.4	0.2	1	23	517	539	517	539	0.97
6	8	7.3e-06	0.00079	20.3	0.8	2	23	545	566	544	566	0.97
7	8	5.3e-07	5.8e-05	23.9	0.7	1	23	572	594	572	594	0.95
8	8	0.00024	0.026	15.6	1.0	1	23	600	622	600	622	0.98

Sequence Information

Coding Sequence: ATGTCGTCCCTCGATTATATAGATTTGTGTCGGTTATGCCTCGTCAAAGATCATGTGAACGTGCCGATCTTCGAGGGCGAGGGCGACGTGCGACAGATATTCCTCAAAATCGCCGCCTGTTTGCCGGTCAAGgTCGCAAGAGAAGACAAACTACCAAAAAAGATTTGCGATGACTGTGTGTACAAAGTAGAATCGTTTTATCAGTTTTGGAACACTACTGCAAGTGCTGAGAAACAGCTTTTTCAGTGGATAGGAGAAGAAAACCTAGAAGATAAGCAAGGATATGTGaACGTGATGAAACAAGAACAAAATAGTGAGAATAGATTCAGCAGCAACGTGATTCAAGTGGCAGGCAATCAAAATAACATGGACATCAGACTGATGGATAACATGGGATTGGGAATGCCGATCATAATTTCGTCCAGCAATCAGCAACAAATATCATCAGTTCCTCTAGACTCGGCTGATAATTCAGTAACACAAGTCCAAGCTGTTCCTAGTTCTAGTTCTCATGAACAAATGTCACAAAGCCAAACAAACATTGCCACTCAGGAGGAAGATGATGACGAAAGTGATGATGACAACATGGATGATGAGTGTGATGGTGATGAAGgATTATCAGTTAAAGAGGAAGGCGAGGATGAGCTCAATAGTAACAAAAGTATCGAATCGTCTACGTTCGTGAACGTCGGGATCACTTGTGATCAAGCCGGTCCATCGGGGCtccaacaacaaaaaattactgagATGACGGATATCGGGTTGCAGCAAACTTCGGAAGAAGATCCCAAATCCGGgGACGGCGGGACGTTCGGCGGCTTGTCTGGGATGTTGCGACAGATCCTGTCGCCGTCGCCCGAGACGGTGACCGACGTGTCGATAACGAACTATTATAACACCCTACAACCCTCGATTTTTACAAGTCATACCACACTATTGCCACCACCATTTCAGATGCCAGGATGCCAGACTGTGGCACCATCTTCGTCCCAGTACCAGAACATCTACGAGCAGAGTTACGAGCCGGTGCAGGTGTACGCCGAGTCCTACATCTGTCCGATCTGCAACCTGGAGTTACGCAGCGCGGTGAAGCTCAATTACCACATGCGCACGAACCACGAGGGCGGGGCGCTGCACCAGGGCACAGAGAGTTACCAGAGATTTGTCTGTCGGTACTGTCCCAAGACGTTTTACAATCACAGTCATCTGAGGGTGCACGAGATCACCCACGCGACCCAGAGTGCAAATCAGATCTACTCGGTGCCGGCGCCCCAGgtgcagcagcagcaacagcagagCTACCAGCAGCCGAGCTTCTCGTGCGACCGGTGCCAGGCGAGCTTTCGGTACCGGACGCTCCTCGAGAAGCACAAAAAGATGCACGACTACGACGGCGAGAAGCCGTTCTCCTGTCCGCACTGTCTCATGCGTTTCGAAACGAGGAACCTTTACAACCACCATGCGAAAACGCACAAGATTAATAACGCGAAGCAGCCGACCCAGACGGCACTCAGGTACGATAACAACCAGGCTGAGACGCCCGCGACCTTTCCCTGCGACGCGTGCAACAAGACATTCGCCACCGTCGAGTCGCTCAATACACACAAAAGTGTGCACAAGACCAGGCCCCTGGTTTGTGACGTGTGTGGCAAAGGATTCACCCATCGCAAGTATTACGTTGTGCATCAGCGCATACACACCGGAGAGAGACCTTATCTTTGTGCCATGTGCGGCAAGAGCTTCACACAGGCGTCTACGCTCACTGTTCATCGGAGATACCACACAGGGGAGAGACCTTACACTTGTACGCTCTGTGGCAAAGGATTTGTCACTCGTACCATCATGCTCAAtcatatgaaaaaacattag
Protein Sequence: MSSLDYIDLCRLCLVKDHVNVPIFEGEGDVRQIFLKIAACLPVKVAREDKLPKKICDDCVYKVESFYQFWNTTASAEKQLFQWIGEENLEDKQGYVNVMKQEQNSENRFSSNVIQVAGNQNNMDIRLMDNMGLGMPIIISSSNQQQISSVPLDSADNSVTQVQAVPSSSSHEQMSQSQTNIATQEEDDDESDDDNMDDECDGDEGLSVKEEGEDELNSNKSIESSTFVNVGITCDQAGPSGLQQQKITEMTDIGLQQTSEEDPKSGDGGTFGGLSGMLRQILSPSPETVTDVSITNYYNTLQPSIFTSHTTLLPPPFQMPGCQTVAPSSSQYQNIYEQSYEPVQVYAESYICPICNLELRSAVKLNYHMRTNHEGGALHQGTESYQRFVCRYCPKTFYNHSHLRVHEITHATQSANQIYSVPAPQVQQQQQQSYQQPSFSCDRCQASFRYRTLLEKHKKMHDYDGEKPFSCPHCLMRFETRNLYNHHAKTHKINNAKQPTQTALRYDNNQAETPATFPCDACNKTFATVESLNTHKSVHKTRPLVCDVCGKGFTHRKYYVVHQRIHTGERPYLCAMCGKSFTQASTLTVHRRYHTGERPYTCTLCGKGFVTRTIMLNHMKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01493106;
90% Identity: iTF_01493106;
80% Identity: -