Basic Information

Insect: Trissolcus japonicus
Gene Symbol: -
Assembly: GCA_030522925.1
Location: JAPYZS010000097.1:121569-124436[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4.1e-05 0.0045 18.0 4.6 2 23 381 403 380 403 0.94

2 7 2.5e-06 0.00027 21.8 0.4 1 23 414 436 414 436 0.98

3 7 4.9e-06 0.00054 20.9 0.6 1 23 442 464 442 464 0.97

4 7 0.11 13 7.1 0.2 3 23 473 493 471 493 0.92

5 7 7.3e-06 0.0008 20.3 1.8 1 23 501 523 501 523 0.97

6 7 1.7e-07 1.9e-05 25.5 0.3 1 23 529 551 529 551 0.97

7 7 3.5e-05 0.0038 18.2 0.4 2 23 563 585 562 585 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4.1e-05	0.0045	18.0	4.6	2	23	381	403	380	403	0.94
2	7	2.5e-06	0.00027	21.8	0.4	1	23	414	436	414	436	0.98
3	7	4.9e-06	0.00054	20.9	0.6	1	23	442	464	442	464	0.97
4	7	0.11	13	7.1	0.2	3	23	473	493	471	493	0.92
5	7	7.3e-06	0.0008	20.3	1.8	1	23	501	523	501	523	0.97
6	7	1.7e-07	1.9e-05	25.5	0.3	1	23	529	551	529	551	0.97
7	7	3.5e-05	0.0038	18.2	0.4	2	23	563	585	562	585	0.95

Sequence Information

Coding Sequence: ATGACGGATAAAGTCGAGATAATGGACATCTTAAAAGAAGCGATCAACTGTGACGAGATCATCATCGAGTCCGAAGAAGCCGGGGAGGAAGTGGTGGAAGAAACAACCGAGGAATATGAGATCATCGACATCATCGAGGAGATAGAGGAGGTGACCGAGCCGGAGGACCAGGAGGAAGACGACCAAAAAGACGCCGAGAGTTATCAGAAGGAGGAGAAAAGCGTCGCCCAAAACGGTAACGCGAACGGCGACGTGAGACGAGCGAAGAACATCGAGTACAACGTGAGCGACGACTGGGAGGACGAGGAGATGGGAGAAGTCGAGCGACTGGACACCAATTCGTCCGACCTGATTCTCGCCCCCCAGGTGGCAAAGAAGTACGGGGCTTCGAAAAACAAGAGGGCGCTGGACGAGGCCGAGGCAAAGAGCACCAGCGAGTCGCACGCAAAGAAGTCTCGCATGACGTCGTCGGACTTTGAGGAGCAGACTAGTAACGACGGAGACGAGCTGGTTAAGACCGAGAACGATCTCGTGTACACGGTACTAGAGTCTAAGAAACACCATTCCAATCATATCGTCGAAGAGGATAGTCAGCATAGGattgagCAATTGGAAGATGAATCAATTCCTGTGGAAGGTGCAATCTACTACGACAATGAGAACGAGAACATCACCTATGTGACGCAAACCGGAGAGGATGGCGAACAGTACCGTTTCAACACGGTGATGTCCAATGAACAGGAGTGGGACAACTCGCAGCAGAGTATGGAGCAACCCCAGGACGATGATAGCGAACAGGGACAAATATTCTTACACGAGGATGAAGAAGGACACCTGTATTTTAAGGATGAGAACGGTACCTTACAGCCAGTGTACCTAACAGAGGATGGAAACTATGCGATTGCTAGTAACGACAGCGACGATCTGGAAAATCGGGAGCAGCAGTCAGACGAGTCTCAGATGGTCGTCCGGTCGAATGATCAGGAAGAATACATTCTCTCTGATAAGGAACTCATTGGCTCGTCTAAGCAGCAGGACGTGGACAGCGAAGACAACACGGTCACGATCTCTCTGATCATCTCCGAAGATGAACACGGCCAGAAGAGAACCCAAGTCATCATCCCTACGACGGAGAATCTCAAATGCGACATATGCCATAAGACTTTCAAGACGTCCTTCCAGTTGTTGAAGCACAACCGATTGAAGCACGCCAGAGAGGAGGACATCACAACAAGAAACTTCCCTTGTGATTTGTGTCCTAAGAGATTCCCGGACCAGAATTCGTTGGCGCGGCATCGCAAGTCGCACACCGGTGATCGACCTTTCCAGTGTCTCGAGTGCCAAAAGACGTTCCCAACGGCGACTGCCCTGAGGCGTCATCTGACACTGCACAATCCGCAGTCCCGCCCGTTGCCGTGCATTTACTGCGGCCGTCGCTTCTTGGAGAAAGCGAGTCTGGCAAAACACGAGCAGTCCCACTTGGCCGCCGAACAGAGAAACCACGTCTGTGACATCTGTCACAAGGCGTTCTCGCAAGCGAGCGAGCTTGCCCTGCACAAGAAGAATCACGATCCGgacagaaaatttgattgcgaGGTGTGTGGTCGGGAATTTAATcgtttaaacaatttgcaacGTCACATGATGGTACACCAACAACAGCAGGGAGAGAACGAGGAGATTCTTTCGTGCGAGGTTTGCGGGATCACGTACAAGTTCATGAGCTCTTTGACCAGGCACATGGTGACAACTCACATGAACCCGGAGAAGATGCGCCAGCAGGCGGAGGAACAGCGAAGGAAACGCGAGAACAACTACCGACGATACCTCGAGAACCGCAAGATGTATGAGACTCAAAACACGGGAACTTATGTCAAGCGTTCTTATCAAAGATCGATGCGTATGAACGACGACAATGACGACGAAGTGTAA
Protein Sequence: MTDKVEIMDILKEAINCDEIIIESEEAGEEVVEETTEEYEIIDIIEEIEEVTEPEDQEEDDQKDAESYQKEEKSVAQNGNANGDVRRAKNIEYNVSDDWEDEEMGEVERLDTNSSDLILAPQVAKKYGASKNKRALDEAEAKSTSESHAKKSRMTSSDFEEQTSNDGDELVKTENDLVYTVLESKKHHSNHIVEEDSQHRIEQLEDESIPVEGAIYYDNENENITYVTQTGEDGEQYRFNTVMSNEQEWDNSQQSMEQPQDDDSEQGQIFLHEDEEGHLYFKDENGTLQPVYLTEDGNYAIASNDSDDLENREQQSDESQMVVRSNDQEEYILSDKELIGSSKQQDVDSEDNTVTISLIISEDEHGQKRTQVIIPTTENLKCDICHKTFKTSFQLLKHNRLKHAREEDITTRNFPCDLCPKRFPDQNSLARHRKSHTGDRPFQCLECQKTFPTATALRRHLTLHNPQSRPLPCIYCGRRFLEKASLAKHEQSHLAAEQRNHVCDICHKAFSQASELALHKKNHDPDRKFDCEVCGREFNRLNNLQRHMMVHQQQQGENEEILSCEVCGITYKFMSSLTRHMVTTHMNPEKMRQQAEEQRRKRENNYRRYLENRKMYETQNTGTYVKRSYQRSMRMNDDNDDEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01493093;
90% Identity: iTF_01493093;
80% Identity: -