Tjap012792.1
Basic Information
- Insect
- Trissolcus japonicus
- Gene Symbol
- wek
- Assembly
- GCA_030522925.1
- Location
- JAPYZS010001249.1:6246-9509[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.6 1.8e+02 3.5 0.3 2 23 128 150 127 150 0.93 2 14 0.081 8.9 7.6 0.0 2 23 408 429 407 429 0.96 3 14 2.1 2.3e+02 3.2 5.4 3 23 436 457 436 457 0.98 4 14 0.00037 0.04 15.0 1.0 1 19 467 485 467 488 0.93 5 14 2.4e-05 0.0026 18.7 2.2 1 23 497 519 497 519 0.98 6 14 6e-05 0.0066 17.4 0.4 1 23 532 554 532 554 0.98 7 14 4.2e-05 0.0046 17.9 2.1 1 23 562 585 562 585 0.97 8 14 4.4e-05 0.0048 17.9 5.3 1 23 591 613 591 613 0.97 9 14 0.058 6.3 8.1 0.9 2 23 617 639 617 639 0.96 10 14 0.014 1.6 10.0 1.6 1 23 658 680 658 680 0.98 11 14 0.00024 0.027 15.5 2.3 1 23 686 708 686 708 0.97 12 14 2.3e-07 2.5e-05 25.0 1.7 1 23 713 735 713 735 0.98 13 14 4e-05 0.0043 18.0 4.6 1 23 743 765 743 765 0.98 14 14 3.3e-05 0.0036 18.3 1.2 1 23 771 793 771 793 0.98
Sequence Information
- Coding Sequence
- ATGGATATAGAGAATGAAACGACATTTGTTGGATgtcaaaataatgaacaagaCTCGCAAACATTGGAATGTTGGAGCGACGGCAACGGTGTGATTTGTAGATTGTGCGGCAAGAAGACTGACAATTATGTACcaattttcggaaaaaattatgttgcCGAAAAAATTAGCACATGCTTACCGATTAAAGTCGAGTCGGAAGACGAATTGCCCTCCAACATATGCAAACGTTGTTTTCATTGTCTCAACATAAGTTACAAACTTGTAACAAGCTGTATCAAAGTGGACAATTTACTTCGAGAAAAGTTGGGCAGTGACAAGAAGAACAACAAATTCAAGTCCGAGAGTTTGACAACTACTGGAGAAGAGCAGAGTCCTTTGATTTGCAAGAAATGCAGTATAATATTTCTTGATATCGTGTCGTTTAAAACGCATGTCAACAAGATTCATTTAGTAAGAGATGACAACAACGATGATACAGAATTGcctaatgcaaaaaatttaaatcaaatagaaaatttgattgttgtaagaaaagaaaaatactcgCAAGCAAAATCTGTGCCAAACATAATTCGTTCGCGTAACGCTTCGAATTGTCAAAAGCAAATAATAACGACAACAAATGAGTTGAAAGAGACGACTTTGAATTTGTCTCAGAAGCCTTTTATTCCCGTTGAGTCTCAAGTGAAACTGGTCCCAATCAGTAACATTGTATCTCACTCGTCCATAACATCCAAtcgaaatgtcaaaattttgccaaaaaacGTTTTGGGACAGACTATTAAAATCGTGCCAGACACCGTTCAACATCATcccattcaaatttttgccaaTACCATATTACCAAACACGATGTCAGCTTCTAACCAGCAGCCGATCAAAATCATTGCGACAAAGTTTGGGACCAACAACttgtcgtcgtcgtcgtcgtcgtcatCCTCAGGTACTCTTCAGTTCATCTCCACAGATGTTGCGATTCCGATGAACGCAAAAGTAGCCATCCCTAGGATGCCAGCTGTCACGCCGAAAAGTAGTCGTCGTGTTGTTCTGAAAGACAAGAAACAAGAGACAcgacaagttgaaaaaagggATCACAATTATACTACAGCCAACAATGACAATGACAATGACAATGACAATGACAATGACAATGAATCGGACGAATTGCCTCTGCAAGATGCGCCTACTGCCTACAGGTCGGTTTGCCACTACCACGTTCAGTGCAAGATATGCGGCATTGGGGTAGAAGATGATGACCTTCTATTAGCtcataacaaaattcatcaaccACAAAAGATGGGCTGCAAAGTATGCCACCAAGAGTGCGATTCTTTGTATGATTTGTACATGCACAAGAAGAGAAAACACAACGTCTACAAAAGGGTGTCTTTGAAGTTTTCATGTGAGCAGTGCGGCAAATTTTTTACCAACAGTTGGCAGTGGGAACATCACGAGGAACACAAgtgcaagaaaaaatttccaatGTACCCTTGCAAATATTGTAGTTTGGGATTCACAACgaatcttaaattaagacgACATCTAAGGAAACACAAAAAGGAAATGTTGGCGGATCCGGAAGTTGAGGTTTTCAAGTGCGTCGGATGTCCAAAAGTGTTTGTAGACGAAgagttttatcaaaaacacaGAAACGTACACGATCCAGAGTGTTGGGATAAATACAAATGCGGCATTTGCAATCGTTCGTTTCGTGATAATGTGAGATTAAAAGAGCATCATCAATCCATTCACGAGGGCATCAAACCACACCAGTGTGATATTTGTGGTCGAACGTTCCATCGCAGATCAAACATGAAAGTACACAGAGACAAACATTTTGCCCGTAAGTGTGAGCATTGCAACGAAGGCTTCTTGAAACTGAACGAATTGATTACACACATCAAGCAAGTTCACAAGCTTGAACCAGACAGAAAACTTTTGGCAAAGAAGCAGTGCAAGAGTGGATACTACGTTTGCagattttgtggaaaaaaattgtcaacgcaTCAGTCGGTTTTAGATCATGAACGCATTCACACTGGGGAAAAGCCTCACGAGTGCAAAACATGTGGAAAAACGTTCCGAACTTATACTGCTAGATGGGCTCATGTACAGAGACACAAAAAAGGTAGTTTTACCTGCGAACATTGTGGTAAAGTTTTTAGttacaaacaaaatttgctgacTCATATACTGATTCATATGCCCGTCGAGGAAAGGAAGCATCAGTGTTTGAAATGTGGTAAAAAGTTCTTGAGAAAAGGCCACTTGAACATTCATATGAGGATACATAATGGCGAACGGCCCTACACATGTGACATCTGTAACTACAGTTTCACGCAGATGGGTGACATGAAGAGGCACAAAGCAAGACATTCCAATAGCCATCATGTCAAATCTAGGAAAAGCCGCATCAAGATTTTAACCAATAATAGTCAACAATATATGCAACAGGTTGAAAATTCAGAAATGTTATACGAAAATGTGGAGCAGGTTAAAGATACCCAACACGAGATAAATGTTACGCGCCAACTGGAACAACAGAAACACAACAGTCGAGCTGTTGGGTTCATTCAAGGTGAAGATGATGATAGTGTGATTCACCAGGTCGATGAGATTCAAGAGATGAACAGTGATTTGGAATaccaaatcaattttattatgaatcaaGGGGAACCAGTTGAAGAAGTCATCATTCATGAGAAAGATTGTTGA
- Protein Sequence
- MDIENETTFVGCQNNEQDSQTLECWSDGNGVICRLCGKKTDNYVPIFGKNYVAEKISTCLPIKVESEDELPSNICKRCFHCLNISYKLVTSCIKVDNLLREKLGSDKKNNKFKSESLTTTGEEQSPLICKKCSIIFLDIVSFKTHVNKIHLVRDDNNDDTELPNAKNLNQIENLIVVRKEKYSQAKSVPNIIRSRNASNCQKQIITTTNELKETTLNLSQKPFIPVESQVKLVPISNIVSHSSITSNRNVKILPKNVLGQTIKIVPDTVQHHPIQIFANTILPNTMSASNQQPIKIIATKFGTNNLSSSSSSSSSGTLQFISTDVAIPMNAKVAIPRMPAVTPKSSRRVVLKDKKQETRQVEKRDHNYTTANNDNDNDNDNDNDNESDELPLQDAPTAYRSVCHYHVQCKICGIGVEDDDLLLAHNKIHQPQKMGCKVCHQECDSLYDLYMHKKRKHNVYKRVSLKFSCEQCGKFFTNSWQWEHHEEHKCKKKFPMYPCKYCSLGFTTNLKLRRHLRKHKKEMLADPEVEVFKCVGCPKVFVDEEFYQKHRNVHDPECWDKYKCGICNRSFRDNVRLKEHHQSIHEGIKPHQCDICGRTFHRRSNMKVHRDKHFARKCEHCNEGFLKLNELITHIKQVHKLEPDRKLLAKKQCKSGYYVCRFCGKKLSTHQSVLDHERIHTGEKPHECKTCGKTFRTYTARWAHVQRHKKGSFTCEHCGKVFSYKQNLLTHILIHMPVEERKHQCLKCGKKFLRKGHLNIHMRIHNGERPYTCDICNYSFTQMGDMKRHKARHSNSHHVKSRKSRIKILTNNSQQYMQQVENSEMLYENVEQVKDTQHEINVTRQLEQQKHNSRAVGFIQGEDDDSVIHQVDEIQEMNSDLEYQINFIMNQGEPVEEVIIHEKDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493757;
- 90% Identity
- iTF_01493757;
- 80% Identity
- iTF_01493757;