Tjap009522.1
Basic Information
- Insect
- Trissolcus japonicus
- Gene Symbol
- -
- Assembly
- GCA_030522925.1
- Location
- JAPYZS010000546.1:13727-16232[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.69 76 4.7 0.1 1 23 335 357 335 357 0.91 2 12 2.8 3e+02 2.8 0.4 1 20 357 377 357 379 0.88 3 12 1.9e-06 0.00021 22.1 2.2 2 23 423 444 422 444 0.97 4 12 5.6e-05 0.0062 17.5 0.2 1 23 450 472 450 472 0.98 5 12 0.00043 0.048 14.7 2.4 1 23 478 500 478 500 0.98 6 12 8e-05 0.0087 17.1 2.4 1 23 506 528 506 528 0.98 7 12 0.00024 0.026 15.5 2.2 1 23 534 556 534 556 0.98 8 12 6.9e-07 7.6e-05 23.5 0.7 1 23 564 586 564 586 0.98 9 12 0.0051 0.56 11.4 0.2 1 23 592 614 592 614 0.94 10 12 0.00034 0.037 15.1 1.5 1 23 620 642 620 642 0.98 11 12 2.3e-05 0.0025 18.8 0.6 1 23 648 670 648 670 0.98 12 12 0.029 3.1 9.0 3.4 1 23 676 698 676 698 0.96
Sequence Information
- Coding Sequence
- ATGACTGTGGTCGAAGAGTTTGACTATCTATGCCGATTGTGCGCCACAAAAACTGGCATCCTTATGGGCCTGCCAATCTTTGAAGCTGGGGAACAAATGCGTAACATAGCTAAAAAAATAGTCACTTGTCTTCCTGTCCAGgTCTCAATGACTGATCAGCTCCCTAAGGTAGTTTGCGAAGAATGTGCATTCAAATTAGATCAACTGTTTGATTTTCGTGAGAAAGTGTTGCATACCGAGGGTATGTTTATAGAGATGTTGAAACAAATCACGAAAGAGGATGTTGCAACAATACAACGATTGAATGGTGTGGAAGATTTAGCGGATATTCAAGACAACTTGGATATGACAAGTAATTTAGAAACCATTGAAGAGATTCATAAACACGTCAGCTCAACAAATGAGAATGCAGAAGCAATCCACACGATACACGTGATGGACGAGATGAGTTTGACTGGAGGAGAACAGGTTGTTGTACAAGAAGAGATGGCACACCGGGAAAATGATATCCAAGTCACTGGGATTAATTGCTTGGATGGCGAAACTGTACAAATGGTTTCAAATCATCAGATAGCAATGCACCTTGATGAAGATATTACTGTTGTAGAAAATTTGACCGTGAGCGACTCTCTTGGACAACTAGGAATAAATTATGTGACAGCAATCAATCCAGAGGATAACGCTCAAACACAGATGGTGCATTACTGTGAAGCTGtaacaatcaaaaatgaatatcaaaatgtATCGAAACCCTTAGCACCTCAACATCTAAGAAATgTATCATCAACGGCCTTTGCTGTAAACTCCGAAGAAGGAACTTCTGAACGAGACAATCATGAAAACAGGGCCCACGATGTGTCGCACCCAGAATCATTACCGTCGACAAGTCAAGTTATAGTCGAAAACGAAAGAATAATAGTTGAGTATAACAAGTCAACAAAAGCATCCCTATTAGAGTCCGCGCTGAACAATCCTACGATTGATCAGATAGGTGCAGCTTGGCACATTTGTCCGTTCTGTAACAATGCATCGCCGGATGCTGTCAGTTTGTCTACACATTTTGATCAGCATTTTTGTTCCTGCGAGTGTGGTATCTATTACACCAGCGTGGAGATGCTGGATGTTCATAAGCAAAATTGTGatttctttgaaaacaaattaccTCAGAACAATAAAGAAAGCAAGTGCTCTAAACAGAAAGCACTGTTCAACTCGGAAGATGAAACTAAAAAGCAACCGAGTGTAAGACAAAAATGGACTCCGAAAGTTTGTAACCAATGTGGCAAACAATATCgcacaaattacaaattgcaGGAGCATATGAGAAAACACACTGGAGAGAAACCGTTTCAGTGTGCAATGTGTGAAAAAGCATTTCGCAGTAAAATAGGTTTGGCACAACATACGGCAACGCACACTGGTCAGTTCGATTACAATTGCTCGACCTGTGGAAAAGGTTTTCAATGCAAGAGTTACTTGATCGTGCATCAACGCGTGCATTCAGACTTGAAGCCATATCGATGCACGACTTgtgatcaaaatttcaaaactaaacAGTCACTGCTGGATCATGAGAATCGTCATTTGGGTGTAAAGCCATACATGTGCGAGATTTGCGGTCGCAGATTCATTACAAAAGGCCTGTGCAAAAGCCATCAGAAGATTCACTCAGACACCGACAACCGGCAGTATCCGTGTATGGTAtgcaacaaaatgtttgtgaGCAAGAGCTACCTCAACACCCACCTGCGTATTCACACAGGTGAAAAACCTTATCTCTGCGAAGTCTGCGGCAAAGGCTTTCTAACTCGAGTGGACCTCAAAATTCACTCAACAATGCATACGGGTGAAAAGAGTTTCAAATGCGAAGTCTGCGCTAAAGTTTTTGCTCGCCGTGCTGCATTGCAGTGCCATCGGCGCTCTCACACGGGTGAGCGCCCTTATCGTTGCGATGTCTGCGGTAAAACCTTTACACAGTTTAGCCCCATGGCTATTCATAAGCGTTTGCACACCGGTGAACGGCCCTATGAATGCGATGTTTGTGCTAAAACATTTGTCTCGCGTTCGACCATGATGTGCCATAAGAAAAAGCACAATCTCAATGCCACTACCAATGTTTCAAAACAAGATGGCAAAGTTGAATGCAATAAACAAACTCAAGTTTCGACATAA
- Protein Sequence
- MTVVEEFDYLCRLCATKTGILMGLPIFEAGEQMRNIAKKIVTCLPVQVSMTDQLPKVVCEECAFKLDQLFDFREKVLHTEGMFIEMLKQITKEDVATIQRLNGVEDLADIQDNLDMTSNLETIEEIHKHVSSTNENAEAIHTIHVMDEMSLTGGEQVVVQEEMAHRENDIQVTGINCLDGETVQMVSNHQIAMHLDEDITVVENLTVSDSLGQLGINYVTAINPEDNAQTQMVHYCEAVTIKNEYQNVSKPLAPQHLRNVSSTAFAVNSEEGTSERDNHENRAHDVSHPESLPSTSQVIVENERIIVEYNKSTKASLLESALNNPTIDQIGAAWHICPFCNNASPDAVSLSTHFDQHFCSCECGIYYTSVEMLDVHKQNCDFFENKLPQNNKESKCSKQKALFNSEDETKKQPSVRQKWTPKVCNQCGKQYRTNYKLQEHMRKHTGEKPFQCAMCEKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYRCTTCDQNFKTKQSLLDHENRHLGVKPYMCEICGRRFITKGLCKSHQKIHSDTDNRQYPCMVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCEVCAKVFARRAALQCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDVCAKTFVSRSTMMCHKKKHNLNATTNVSKQDGKVECNKQTQVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493080;
- 90% Identity
- iTF_01493080;
- 80% Identity
- -