Tjap006920.1
Basic Information
- Insect
- Trissolcus japonicus
- Gene Symbol
- -
- Assembly
- GCA_030522925.1
- Location
- JAPYZS010000272.1:87380-89509[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.077 8.5 7.7 1.0 2 20 89 106 88 108 0.92 2 13 0.0027 0.3 12.2 1.5 1 20 114 133 114 136 0.96 3 13 3.4e-05 0.0037 18.2 1.2 1 23 142 165 142 165 0.94 4 13 9.8e-06 0.0011 19.9 0.5 1 23 171 193 171 193 0.98 5 13 5.8e-05 0.0064 17.5 1.0 2 22 278 298 277 298 0.95 6 13 0.00023 0.025 15.6 2.7 1 20 318 337 318 340 0.92 7 13 0.011 1.2 10.3 0.2 1 23 345 368 345 368 0.92 8 13 1.1e-06 0.00012 22.9 0.3 1 23 374 396 374 396 0.98 9 13 0.0014 0.16 13.1 6.9 1 23 403 425 403 425 0.98 10 13 0.0003 0.033 15.2 0.4 3 23 433 453 431 453 0.97 11 13 0.00034 0.038 15.1 0.2 1 23 459 482 459 482 0.96 12 13 0.33 36 5.7 0.1 1 23 496 518 496 518 0.94 13 13 0.0036 0.4 11.8 0.1 2 23 686 708 685 708 0.93
Sequence Information
- Coding Sequence
- ATGGAAACTTACGAGAGCGAGCAATACATAACCTTTCCAATCGGCCTATCGGACGCCCAAGAAAATACCTCAGTGGTAATAAAATCCGACCCGCAGTGTCTGGTTCCCGAGATGTTAACCGAACCCGTCTCCGACGTGGAGATCAGCTGTCCAACGTCAGACCCGATCGAGAAAGAGGAACTCCACTCGGGCGACGACGAGTCAATGGCGGTGGAGGCGCTGCGCCAGCTGGGCAGCGTGGTGCCCCGGTTCAGCGAGAAGAAAACCTGTCCCTCGTGCGGTCTCTCGTTTTCCGCGTGCGACCTGGAGCACCACCGGTTGGGCTGCAAGGTGGCCAAGTACAGCTGCTCCATCTGTCCCGAGCGGTTCGAGAAGAAGGCCGAGTACAGCAACCACATGGTCTGTCACCAGGTAGACCGTCCGCACGCGTGCCGCACCTGCGGCACCCTTTTTCGTACGAAATCAAGTCTCCAGGTACACATGAACGAGGCCCACCAGGCAGGCAAGGTGCACCGCTGCGCCATCTGCGGCGTGGACTTTCAGCGGCCGTCGAGTCTGTCCAACCACATGAAGATCCACAGTTACGTCGCGGGCAGGGCGATCAGCCAGAAGAACGTCGAACAGGCCTCGACCTCGCAGGAGGTCGAGTGGTCGGTACCCGTTTACATGGAGCAGAGCCCCGAGGACCTTCAGGAGTTCACCGTGGTGGCGAACGGGGAATACCCGAGCCAGCAATTCGTGATCGGGACGTTCGAGAACTCGTCGGAGTCAGCAATCAAGATCAAGTCAGTGGAGTCGCTGGAGGAGGAGGAGGGGAAGGCTTCGCCGATCGAGTGCGAGTTCTGCGACAAGCAGTTTCGCGATCGCAATCACCTCGCGACCCACCAGAAGACTTGCATCAAACGGATCGTGCAGACCAGCGGCCCCGACCAGGCCACCAACTGGGGCAAGCACGCATGCACAGAGTGCGGCAAGAAGTTCACCACCAAGCAGAAGATGTTCCGACACCAGTGGATCCACCGGAAGAAGACCCACTCGTGCGAGGTCTGCGGCTCGCAGTTCGAGCGACAGGTTGAACTCGACGAGCACCGGTTGGCGGCCCACCCGGGCGACTCGCCCTTCACCTGCACCGAGTGCGGCAAGAGTTTCGTGTCCCGGCAGGGACTCTGGGAGCACGGGCGAACCCACGCAGGTAGCCCGGCGCACTTCCATTGCGACAAGTGTTCGAAAACTTTCACCTCCAGACAGGGGTACCTGATTCACCACAGGACGCACACCGGCGAACGACCTTACGGTTGCAAGTTCTGCTGGAAGGCCTTTAGGGACGGCGGCACTCTGAGGAAACACGAGAGGATCCACACGGGGGAGCGACCCCATGTTTGTCCCCTTTGTTCCAGGGCGTTCAATCAGAAGGTCGTGCTCAGGGAACACGTGCGCTGGGTCCACGCGGCTTCGAAGAACGTGAGCGACGCGGACGGACCGCCTTTTGCTTGTCCCCTTTGCGGTGACCTCAGTCAGGACAGGGACGAGCTCTGTGCCCACATAGTCAAGCACTCGGACAAGATGATCGCTGAGGCGAAGGCGAAGACTGCCGAACCCAAGAAGACTGCCAAGACGACGAAACGAAAGCCGAAAAAGAAGCCATCGGGCGAGGAATCGGAGGCGGAGCAGGAGCAGGTTTACTTGACGGTCGCCGAGCCGATCAAAGACCAGGTTTTTGTGGACGTGGATAAACAGCAGACGTACATCTTGGTCAATGCCGGCAAGAATGGCAAGTTTCAAGTGATCTCGGATATCAAGCAGGGGAGGATCAGCAAGGCTGAGACCATTCAGATCTGTATTGACGAGGACGACGGGGAGGACCAGAAGAAAAACACCCTGCAGTTGATCTCGAAACGGAACGCCGGCACGCCGGTCCTCGCGATCCCCAACCCTCAGAGCGACCAGTTTTCTAGTCAGATACAGCTGATGGAACAGGAGGAGTTTGAGCAGGACGAGCTGGAGATCATGCACGTCGAGGGGGTCCAGTTCGAGCAGGACGAGACAACGAGCGACGAGTGCCGTGTGTGCGGCGAGGTCGGGTTCAAGGACAAGAGCGAGCTGATGGAACATGTCAAGACTCACATGTAG
- Protein Sequence
- METYESEQYITFPIGLSDAQENTSVVIKSDPQCLVPEMLTEPVSDVEISCPTSDPIEKEELHSGDDESMAVEALRQLGSVVPRFSEKKTCPSCGLSFSACDLEHHRLGCKVAKYSCSICPERFEKKAEYSNHMVCHQVDRPHACRTCGTLFRTKSSLQVHMNEAHQAGKVHRCAICGVDFQRPSSLSNHMKIHSYVAGRAISQKNVEQASTSQEVEWSVPVYMEQSPEDLQEFTVVANGEYPSQQFVIGTFENSSESAIKIKSVESLEEEEGKASPIECEFCDKQFRDRNHLATHQKTCIKRIVQTSGPDQATNWGKHACTECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFERQVELDEHRLAAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDKCSKTFTSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAASKNVSDADGPPFACPLCGDLSQDRDELCAHIVKHSDKMIAEAKAKTAEPKKTAKTTKRKPKKKPSGEESEAEQEQVYLTVAEPIKDQVFVDVDKQQTYILVNAGKNGKFQVISDIKQGRISKAETIQICIDEDDGEDQKKNTLQLISKRNAGTPVLAIPNPQSDQFSSQIQLMEQEEFEQDELEIMHVEGVQFEQDETTSDECRVCGEVGFKDKSELMEHVKTHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493064;
- 90% Identity
- iTF_01493064;
- 80% Identity
- -