Tjap001072.1
Basic Information
- Insect
- Trissolcus japonicus
- Gene Symbol
- -
- Assembly
- GCA_030522925.1
- Location
- JAPYZS010000028.1:84075-89977[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0058 0.64 11.2 0.3 2 23 24 45 23 45 0.95 2 30 0.0017 0.18 12.9 1.8 1 23 51 73 51 73 0.98 3 30 0.0071 0.78 10.9 0.1 3 23 80 101 79 101 0.95 4 30 0.00036 0.04 15.0 0.3 1 23 107 130 107 130 0.95 5 30 0.21 23 6.3 0.1 1 23 135 158 135 158 0.94 6 30 0.0025 0.27 12.4 1.8 1 23 164 187 164 187 0.96 7 30 1.3e-05 0.0014 19.5 0.0 1 23 192 215 192 215 0.96 8 30 0.0026 0.28 12.3 2.6 1 23 248 271 248 271 0.90 9 30 0.0021 0.23 12.6 0.1 3 23 278 298 276 298 0.94 10 30 2.1e-05 0.0023 18.9 1.1 1 23 304 326 304 326 0.97 11 30 6.5e-05 0.0071 17.3 0.8 1 20 331 350 331 353 0.94 12 30 0.0037 0.4 11.8 1.0 2 23 360 382 359 382 0.91 13 30 0.0031 0.34 12.0 2.5 1 23 388 410 388 410 0.98 14 30 0.032 3.5 8.9 0.3 1 23 414 436 414 436 0.98 15 30 0.0012 0.13 13.4 0.7 2 23 449 470 448 470 0.96 16 30 1.1e-06 0.00012 22.9 1.3 1 23 476 498 476 498 0.97 17 30 9.8 1.1e+03 1.0 1.9 3 23 506 527 504 527 0.90 18 30 0.00026 0.029 15.4 1.3 1 23 554 576 554 576 0.98 19 30 0.013 1.5 10.1 0.7 1 23 578 601 578 601 0.98 20 30 4.6e-05 0.0051 17.8 4.3 2 23 608 629 608 629 0.97 21 30 0.0041 0.45 11.7 2.0 1 23 684 707 684 707 0.97 22 30 0.0015 0.16 13.1 0.7 2 23 773 794 772 794 0.97 23 30 0.00079 0.086 13.9 2.1 1 23 802 824 802 824 0.98 24 30 0.00017 0.019 16.0 0.4 1 23 833 856 833 856 0.97 25 30 0.33 36 5.7 2.5 2 23 860 880 859 880 0.97 26 30 0.074 8.1 7.7 4.3 1 23 920 943 920 943 0.93 27 30 0.001 0.11 13.6 3.7 1 23 975 998 975 998 0.98 28 30 0.00021 0.022 15.8 0.2 1 21 1040 1060 1040 1061 0.96 29 30 2.5 2.7e+02 2.9 2.0 2 12 1082 1092 1079 1097 0.88 30 30 0.7 76 4.7 0.2 2 21 1171 1190 1170 1191 0.93
Sequence Information
- Coding Sequence
- ATGAGCGAGCTCTATTCAGCAGCCAATGACTTGGcaataattctaaaaaagcCAGACGCAACTCTCCTAGAATGTCTGCAATGTTCTCAAACGTTTTCGAATCGGATGGACCTTATGGAGCACGCCGAAAGTCACAACCAGCCTCAGAAGTATCAGTGCAAGATCTGTTACAAATACCTGGCGACCCAGTCTTCGATGAAAAACCACAACCGGATACACCGACAAAGGAAGAACATATGCGAGAAATGTGGCAAGGGTTTTTACATCCTGGGTCGACTGAAAAGCCACATGGAGATCATCCACGGGGAGGAGCTGCGCCACTTTTGTCCGCAGTGCCCGAAGGCGTTTGCGGTCCTGCGCAGTCTGGAGTCGCACATAAAAAACGCTCATGGCAAGAAGGAGTACAACTGCACGATTTGCGACAAGTGGTTCTTGAAAAAGTACGCCCTGGCGGAGCACCTGTCGATCGTGCACTCGAGCGCGCGTTCCTTCCACTGCGAGATCTGCGACAAAATGTACGCGACCAAGCGGGCGATCCGCTACCACATCAGCAAATCGCACTCGGAGCGGACCTACCCCTGCCCATATTGTGGCAAGGTGCTGGCGACTCCGAGCAGCTTGAGCGTCCACGTGAAGAACATCCATCAGAAGACTAGGGAACAGTGCAACAAGTGTCAGAAGTACCACGCAAACCAGATGATGGACGTGTGTCCGCACACGACCCAGTTGGAAGTGTGTCGATTCCACTGTCAGATCTGCGACCTCAAGTTTCGTACGCGCAACGAACTCAAGAGCCATAACTTCGTCGTTCATAAGGAGAAGCAACATCTTTGCGACGAGTGCGGCCAGGTCTTCGACACGGACGCCGAGTTGGAGAGCCACACGGCAGTCCACTCGATCGAGAAGAGGTTTATATGTGACATCTGTGGGAAAAAGTACCGGGGCCAGACGTCACTCAAACGACACCGACTCAATCACTTTGAAAAGCAGTTCCAGTGTTCGCTCTGCGACCGCAAGTTCACGCGCGAATACCTTCTTCGACTGCACATGCCCATACATACCAACGAGAAGAACATCCAGTGCACCTTCTGCCCGATGTTCTTCAGGTCGCGCGCCAGCCTTAAGCAGCACGAGTTTATCAAACACAAGACCAAAGCTCGATTCACCTGTAAGGTCTGTGCCAAGACGTTCAACATCCTCAGGGCTTTCAAGCAACACCAGAAGAAACACGAGAAGCGTTACGAATGCGACATCTGCAAGAAGCAGATTGAGATGAAGAATAAGCTTCAGGAGCACGTGGAGATGCACATGAATCTGAACGAGGGTCCGGACGACTATGTTCTAAGCTGCGCGGAGTGTTCGCGCAAGTTCGAGTCGGCCGAAAAGATGAAGCAGCATATGAGCACGCACCTAAACGCGCGACCGTTCAGGTGCAACGTCTGCGATAAATCCTTCTCGACGGCAGGGAACCTACAGTCACACTCGAAATATCACGTGAAGAAACAGGCGCACCTTTGCGAGCAGTGCGGCTACACCTGCCTGTTTGAAGAGGTCCTTGAGAATCACATTCTGAAGTACCACTCGGGCGCCAATGAGATTCAAAAGACCGTCGAGGGGTTTTTCCCGCAAGACGCGCAGGAGGACGAGGTGACCGAACGGTTCTCCTGTGAAGAATGCGACAGACAATTCGAGTCGCTTCAGCTGCTCAAGCTTCATAAGAAGACCCACCTTTACGAGTGCGCGACCTGCAAGCAGAATCTGAGAACGGAAAAGAAGTTGAGTGCGCACATCAAAAAGGAACACAGGACCAAGACCCTCCGCAAGTGTAGCTATTGTGACAAAAGCTTcagcaaaaaaattcatctgatgAGACACGAGAAATTGCACAAAGTGGACCGTAAGAAGAGTAAGATCAAGAGAGATCGGAGAAAAACAACGAGCGAAAACCCAATCAAGACCAAAGAAAAACGGGACCAGAGGAAAACAGGTGAAAAACCAACCGAAAAAGTTGAGACTGAAGGAGCGACAGTTGTGGCGCATAAGAAGTACCATCCATGTAAGAAGTGTGATCTCATGTTTGGCTCGTTAATACGATTACGCATGCACATGAAGACATACCATGCTGAAGCTGTTCGAGTCACTAAAAGAGAAAAATCCAAGACTGCGAAGGTTGACCAGTCGGTTGCAATTCAGGAAACTATCGGTGAATCAGAATCGATGGAGGAGGTCAAGTCAGGGAAGAAAAATGACAAGAAAAGTCAATCGGACGAGTCGGCTTCGACTTCAGGTCAAATCCAGGATGAAAAGGTGTTGATCCAATGTCAACGGTGTGACCAAGACTTCATCAAGGAGGAGACATTTATAACGCACATGAGGAGTCATGATCTGAAGGTGAAAACTCTGCACCGTTGTCAGGAGTGCGAACGAACTTTTGACCAGGCGCAAACTCTTATCGAGCACAAGAACAGACATCAGGACAAAAGCATCGTGCTGACGTTTTACTGTCCACTCTGTGACATGATTTTTAAGACGCAAAAGGGCATGAAGATTCATCTGATGAAGATACACAAGCACTGGAAATGTCAGTACTGCTCTCAGGTGTTGTCCACTGACCACTTTCAAACTCACCTGCTCACCCATGCGACCGGTTCACCAACCGTGTCCAAGATGGACATCGAAGAGATGAACAAAACGGTGCTGGAATCGAACGTGGAGAGCGAGGAGTCTTATCTTAGGAGACAGAAACTGAGGGTTCTCCATCACTGTCCATATTGCGACTTCAGTTTCACTATGTTTAAGTATTTCAGTGCCCATCTGGGCAAGATTCATCAGTTTTTCAAGTGCAGGCCCTGTGACCTCATCATACCTCTGGACAAGGTCGAGCAGCACATGGGTTCCGAGGCCCACAAGGCAGACAAGACGTTTAAGTGCACCGACTGCGGATTGGAATTCACGAATTTCAACAAGTTGTACTACCATCGCAGAAGGAAGCACATGTTCAAGTGTCCCGAGTGCGTTATGATGTACCTACCGACATTGGAAAGCTATAAGGACCATCTTAAAAGTCATGGGATCAagtttgaaaagaagaaaaggatGACGGATCAAACAGCGAATTACACCTGCGCGGAATGTGGTAAGAGCTTCCAAACAAAGAAGGGACTTGGGACCCACCTGAGGGACATGCTGAAGCCCAAGCCTAGGTGGCAAAAAGTCATCTTCCGCTGTGACCCGGTCTGTGCCAAGTGCAAATTTTGCAGCAAGACATTTAGGAGCATTACGTCGCACCTTCAAGATGGTGTTTGTCCGGAGAAACGAAAACAGGAGTgggagaaaaatttcaatgagaTGAAAGTTGCCATCAAGATTGCGGTCTTTAAAGCGGAGCAGAGTCGCAAGCTCGAACTCGAGGCAAGGAGGTTGAGGCGTCAGAGGATGAAGGAGCAGTCGAACTCGGTGGTCGGAGGCTCGATCGGATATGACATCACGAAAGGAAAATGCAAAAAGATCGTGTGCAGATATTGCCCGAACATCTTTTATCATGCAGACGGATATGAGTATCATCTGAAATTCAGATGTGTTGGTGGAAAAAATGCTAAACGTCCAATCTCAGGTGTGGGGTTAAGAGAATGCCGAGTTTTGATCACACAGATCAGTTTGTCAGAGATCCTTCGACATACTGGAAAAAGAATACCTTCACTATTGGATGGTAAAAGACGTCGCAGACCACCGAAGTGTTTCTGTTGCAAAGGCGGAGTTTGTAAAAATGTCGTAAACATTTACAAAGAGCAAAAAAGCCAGATGGAAAAACCCGACGAGTTCGAACGTAATAGACAAGATGAGTTGAATGAAGAGGACGTTTTGCAAGCTTTGGATATCAAAGTGGAAGCCGAGTACGTCTCGGATCATACCTACTTCAACAGCTCACTTTTAATAAGGGAATGTGGAGCTCAAATTCGGTCATACACAGAGAATGAGTTTGACTATCAGAGAAAGCTGGAATCTACAATGGAATCAAtcaaagaacaatttgaaacctTCAACACTAtgactgaaaataattataactatTATAATAAGACTTGGCCTAAGGCTGGAATGGAGTTCTGTTCTTTGGAAGCTGCAAAAAAACCGTTACAGGAACAAACCTGGAGTTATATCTgctATCAGAGACCTGTTCAGATGATTGACATTACAGATAACGCTGGCAAATGCCATGACAAACAATTCACATGGAGTATaaaatgcaattcaatttctcCACCACCTTGTGTCGATGAAGCAATAAaggTTTTTCAAGATTTCTTTGACTCATGGAAGGTTCTCGTGGATCCATTTTTATCCAAACAAGAACTCATCAATTTTCGCAAAGAAATCATTACAATTGATATCGAAGCagattcttcaaaaaatttgtccatTTTGATAACACTGTGCAATGAAAATACCAGCATAGAAAAAGCTTTCGGTTACTATTTTTCCTGTGCCAATGTTCCCAATATCAAGTGCatcatgtacaaaaatattgagacGGAtcAAGATGGAAAAACCGCATTCAAAACAACCCTCATCTTTGGTAACAAGCCTACAGACAAGATTATTTGtgggataaaaataaacatggaAGAGTTCGATTTTGTGAAACAATTAGGCGGTTTACAAGTTATATCACAGACGATCGAAAATTATCTACAATCAGATCTAAATTTCACCTTGTTGGAATTTGGTTGTAAGAATGGTTTTCTCAGCGCGTCTTTGTCAGATaaatacgAAAAAGTGATTGGCTTCGACATAGCCTCAGAAATTGCCACCGGAAGACGTTTGTGTTACTATAATAATATCACCAATGTTACACATGTTGAAGCGACAAGCACTTCTATTATGAGCGTAATAGAAAGCGTTACAAATGAACAGCTTCACGCGATTGTGAACATTGATACGCCATGGATCACTAATCTACATATAATGAGGATGTTACGTTCCTTAAATCATCTGAAAAGCATCGTCCTCATCACTACGTTCTCTCCAAAAGTGTATCTACCAATATTGGAATTAATCACAGCGGACCCGTCGTTTTTTGGTTACTCGTTTATACCAATTCGTTCTTGCGTTATTCCAAAAACGGAGGACAAGAGTCAGTTTCAAATAGTCATGTTGTTATTACGCGAAGACGTATATGAGCGAAAACCAATCAAGGTTGAACCGGTGGATGTATCAAGCTTAGTAGAAACGACGATTGgagaaaatgcaaataaataa
- Protein Sequence
- MSELYSAANDLAIILKKPDATLLECLQCSQTFSNRMDLMEHAESHNQPQKYQCKICYKYLATQSSMKNHNRIHRQRKNICEKCGKGFYILGRLKSHMEIIHGEELRHFCPQCPKAFAVLRSLESHIKNAHGKKEYNCTICDKWFLKKYALAEHLSIVHSSARSFHCEICDKMYATKRAIRYHISKSHSERTYPCPYCGKVLATPSSLSVHVKNIHQKTREQCNKCQKYHANQMMDVCPHTTQLEVCRFHCQICDLKFRTRNELKSHNFVVHKEKQHLCDECGQVFDTDAELESHTAVHSIEKRFICDICGKKYRGQTSLKRHRLNHFEKQFQCSLCDRKFTREYLLRLHMPIHTNEKNIQCTFCPMFFRSRASLKQHEFIKHKTKARFTCKVCAKTFNILRAFKQHQKKHEKRYECDICKKQIEMKNKLQEHVEMHMNLNEGPDDYVLSCAECSRKFESAEKMKQHMSTHLNARPFRCNVCDKSFSTAGNLQSHSKYHVKKQAHLCEQCGYTCLFEEVLENHILKYHSGANEIQKTVEGFFPQDAQEDEVTERFSCEECDRQFESLQLLKLHKKTHLYECATCKQNLRTEKKLSAHIKKEHRTKTLRKCSYCDKSFSKKIHLMRHEKLHKVDRKKSKIKRDRRKTTSENPIKTKEKRDQRKTGEKPTEKVETEGATVVAHKKYHPCKKCDLMFGSLIRLRMHMKTYHAEAVRVTKREKSKTAKVDQSVAIQETIGESESMEEVKSGKKNDKKSQSDESASTSGQIQDEKVLIQCQRCDQDFIKEETFITHMRSHDLKVKTLHRCQECERTFDQAQTLIEHKNRHQDKSIVLTFYCPLCDMIFKTQKGMKIHLMKIHKHWKCQYCSQVLSTDHFQTHLLTHATGSPTVSKMDIEEMNKTVLESNVESEESYLRRQKLRVLHHCPYCDFSFTMFKYFSAHLGKIHQFFKCRPCDLIIPLDKVEQHMGSEAHKADKTFKCTDCGLEFTNFNKLYYHRRRKHMFKCPECVMMYLPTLESYKDHLKSHGIKFEKKKRMTDQTANYTCAECGKSFQTKKGLGTHLRDMLKPKPRWQKVIFRCDPVCAKCKFCSKTFRSITSHLQDGVCPEKRKQEWEKNFNEMKVAIKIAVFKAEQSRKLELEARRLRRQRMKEQSNSVVGGSIGYDITKGKCKKIVCRYCPNIFYHADGYEYHLKFRCVGGKNAKRPISGVGLRECRVLITQISLSEILRHTGKRIPSLLDGKRRRRPPKCFCCKGGVCKNVVNIYKEQKSQMEKPDEFERNRQDELNEEDVLQALDIKVEAEYVSDHTYFNSSLLIRECGAQIRSYTENEFDYQRKLESTMESIKEQFETFNTMTENNYNYYNKTWPKAGMEFCSLEAAKKPLQEQTWSYICYQRPVQMIDITDNAGKCHDKQFTWSIKCNSISPPPCVDEAIKVFQDFFDSWKVLVDPFLSKQELINFRKEIITIDIEADSSKNLSILITLCNENTSIEKAFGYYFSCANVPNIKCIMYKNIETDQDGKTAFKTTLIFGNKPTDKIICGIKINMEEFDFVKQLGGLQVISQTIENYLQSDLNFTLLEFGCKNGFLSASLSDKYEKVIGFDIASEIATGRRLCYYNNITNVTHVEATSTSIMSVIESVTNEQLHAIVNIDTPWITNLHIMRMLRSLNHLKSIVLITTFSPKVYLPILELITADPSFFGYSFIPIRSCVIPKTEDKSQFQIVMLLLREDVYERKPIKVEPVDVSSLVETTIGENANK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -