Tjap007894.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trissolcus japonicus
Gene Symbol
-
Assembly
GCA_030522925.1
Location
JAPYZS010000354.1:94575-97806[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.7e-06 0.00018 22.4 1.8 2 23 11 32 10 32 0.97
2 21 2.1e-05 0.0023 18.9 3.9 1 23 38 60 38 60 0.99
3 21 1.4e-05 0.0015 19.4 4.4 1 23 66 88 66 88 0.98
4 21 0.00024 0.026 15.6 3.2 1 23 94 116 94 116 0.99
5 21 1e-06 0.00011 23.0 0.2 1 23 122 144 122 144 0.98
6 21 1e-06 0.00011 23.0 1.7 1 23 150 172 150 172 0.98
7 21 3.8e-07 4.1e-05 24.4 5.2 1 23 178 200 178 200 0.99
8 21 6.3e-06 0.00069 20.5 5.1 1 23 206 228 206 228 0.99
9 21 6.6e-05 0.0072 17.3 1.7 1 23 234 256 234 256 0.98
10 21 0.13 15 6.9 0.3 1 12 264 275 264 282 0.88
11 21 3.7e-06 0.00041 21.2 2.4 1 23 294 316 294 316 0.98
12 21 5.2e-07 5.7e-05 23.9 4.2 1 23 322 344 322 344 0.99
13 21 5.8e-06 0.00063 20.6 1.7 1 23 350 372 350 372 0.98
14 21 9.3e-07 0.0001 23.1 2.4 1 23 378 400 378 400 0.99
15 21 1.1e-05 0.0012 19.8 2.6 1 23 406 428 406 428 0.99
16 21 7.8e-08 8.5e-06 26.5 3.0 1 23 434 456 434 456 0.99
17 21 2.6e-07 2.9e-05 24.9 0.1 1 23 462 484 462 484 0.99
18 21 1.6e-06 0.00018 22.4 0.8 3 23 492 512 490 512 0.97
19 21 3.8e-07 4.1e-05 24.4 5.2 1 23 518 540 518 540 0.99
20 21 7.9e-06 0.00087 20.2 3.8 1 23 546 568 546 568 0.99
21 21 6.2e-05 0.0068 17.4 2.0 1 23 574 596 574 596 0.98

Sequence Information

Coding Sequence
atgAGAATTCACACGGGTGAGAAACCTTGCAAATGTGAACAGTGCGGCAAGGCCTTCGCCCAGTTGAGTGTCCTCTACAGACACATGAGAAGTCACACAGGTGTAAAGCCgtacaaatgtaaacattgcgGTAACACTTTTATCACGGGGGATCATTTGAAGGATCATCTGAAAATTCACACAGATGAGAAGCGTTACGAATGTGACCATTGCCACAATAAATTTCGTGGAAAGTCTAATTTGAAAGTTCACATGAGCATTCACACAGGTGAGAAACCTtacgaatgtaaacaatgtaaaaGAACGTTCAgacaaatgcaaattttgaaaaaccattTGCGAACCCACACGGGCGAGAAACCGTACGATTGTAAACTTTGCGGTCGTAATTTTGCACAACCCGGCACGTTGATGACACACATAAGATCTCACACAGGTGAGAAACCGTACGAATGTAAGCTGTGCGGAAAACGGTTTACCCATCCGAATACAATGAAAGCTCACGTTAGAATTCACATAGGTGAAAAACCATATGAATGTAAACATTGCGGTAGATGTTTCACCGAATCGAGTGGATTGAGGTCGCATCTGAGAACTCACACGGGTGAGAGACCTTACAGATGTAAACTTTGCGGGAAATGTTTCGTCCAGACAAGTGCCCTGCACAGTCACGTTAAAACTCACTCGGGTGTGAAGCCTTACAAATGTGAAGATTGCGGAAAATGTTATAGAGCGTTACGACCACTGAAAAAGCATGAGATAACTCACATGAGTGTGAAATTGAACAAGTTCATTTGTTTGTACTGCTCAAAAACGTTCAGAAACGTTGATCGcAATGAAGGACACGATGAACCTCCAAGGACAAATGGATCAAGGTTGTACATGTGTGAGGAATGTGGAAAAAGATTCAACTTTATGAACAACTTGAGAAGTCATCGGAAAACTCACACTGGAGAGAAGCCTTACAAGTGTAAACAATGCGGTAAACATTTCCGAGACTCAGCTTATATGAAAACACACATGAGGATTCACACAGGCGAGAAACCTTTCAAATGTGAACAGTGCGGCAAGGCTTACTCCCAGTCGAGTGTCCTTTATAGACACAAGAAAAGTCATACAGGTGAAAAGTcttacaaatgtaaatattgcGGTAACAGTTTTATCACGCGGGATCATTTGGGGGTTCATCTGAGAACTCACACGGGGGAGAGGCCGTACGAATGCGACCATTGCAAAAGTAAGTTTCGTGGAAAGTCTTCTTTGAAAGTTCACATAAGAATTCACACGGGCGAGAAACCCTTCGAATGTgaacattgcaaaaaaactttCAGACAACCGCCATTGTTGAAAAGTCATATGCGAACCCACACGGGCGAGAAACCCTACGTCTGTAAACTTTGCGGTCGTAATTACTCACAACCCGGTGGGTTGATATCACACATGAGAACTCACACAGGTGAGAAACCGTACGGATGTAAGCTGTGCGGAAAACGGTTTACCACGTCGACTGGATTGAAAAATCACGTAAGAATTCACACAGGTGAAAAACCATATGAATGTAAACATTGCGGTAGATGTTTCACTGAATCGAGTGGATTGAGGTCGCATCTGAGAACTCACACGGGTGAGAGACCTTATAGATGTAAAGTTTGCGGGAAATGTTTCGTCCAGACAAGTGCCCTGCACGGTCACGTTAAAACTCACTCGGGTGTGAAGCCTTACAAATGTGAAGATTGCGGAAAATGTTATAGAGCGTTACGACCACTGAAAAAGCATGAGTTAACTCACACGAGCGTAAAATATAACAAGTTATTACGAGTTGTAAAACTGTCAATTGGGGTAAGCGACGACGGCTAA
Protein Sequence
MRIHTGEKPCKCEQCGKAFAQLSVLYRHMRSHTGVKPYKCKHCGNTFITGDHLKDHLKIHTDEKRYECDHCHNKFRGKSNLKVHMSIHTGEKPYECKQCKRTFRQMQILKNHLRTHTGEKPYDCKLCGRNFAQPGTLMTHIRSHTGEKPYECKLCGKRFTHPNTMKAHVRIHIGEKPYECKHCGRCFTESSGLRSHLRTHTGERPYRCKLCGKCFVQTSALHSHVKTHSGVKPYKCEDCGKCYRALRPLKKHEITHMSVKLNKFICLYCSKTFRNVDRNEGHDEPPRTNGSRLYMCEECGKRFNFMNNLRSHRKTHTGEKPYKCKQCGKHFRDSAYMKTHMRIHTGEKPFKCEQCGKAYSQSSVLYRHKKSHTGEKSYKCKYCGNSFITRDHLGVHLRTHTGERPYECDHCKSKFRGKSSLKVHIRIHTGEKPFECEHCKKTFRQPPLLKSHMRTHTGEKPYVCKLCGRNYSQPGGLISHMRTHTGEKPYGCKLCGKRFTTSTGLKNHVRIHTGEKPYECKHCGRCFTESSGLRSHLRTHTGERPYRCKVCGKCFVQTSALHGHVKTHSGVKPYKCEDCGKCYRALRPLKKHELTHTSVKYNKLLRVVKLSIGVSDDG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-