Tjap021447.1
Basic Information
- Insect
- Trissolcus japonicus
- Gene Symbol
- -
- Assembly
- GCA_030522925.1
- Location
- JAPYZS010007661.1:112-1302[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.043 79 4.0 0.4 18 41 8 29 5 31 0.86 2 13 0.02 37 5.1 11.3 13 40 58 83 25 87 0.89 3 13 0.039 71 4.1 3.9 4 29 78 102 75 108 0.82 4 13 0.013 24 5.7 0.8 13 38 114 136 103 141 0.81 5 13 0.13 2.3e+02 2.5 0.9 18 39 147 165 138 169 0.77 6 13 0.0027 5 7.8 4.3 15 39 172 193 162 197 0.80 7 13 0.0055 10 6.8 2.1 6 29 192 214 188 225 0.81 8 13 0.004 7.4 7.3 0.4 13 27 226 240 218 248 0.77 9 13 0.028 52 4.6 0.8 13 36 254 274 245 281 0.75 10 13 0.012 23 5.7 3.3 17 40 286 306 275 308 0.84 11 13 5e-07 0.00093 19.8 3.5 3 40 301 334 299 337 0.92 12 13 4.9 9.1e+03 -2.6 0.9 18 28 343 353 335 370 0.84 13 13 0.0071 13 6.5 2.3 13 40 366 390 358 392 0.78
Sequence Information
- Coding Sequence
- ATGCCGAAGATGGATGAGTATACATGCaccatttgtttgaaaaaattacgtgGTGGTAAAGAGGCGTTTGAACAGCATCTGAGAACACACACAGAAGAGAAGCCACATACTTGTCAACAATGCGGCGaaagtttcaattcaaagAGAATGCTGTCGATGCACATTAACGTCcacgagaaaaaatttgtttgtaaatattgCGACAAAACGTACAGCAATTATCATCGCTTGAAAACTCATGTTGCCGAGCACACGCATGGGAAACGGTTCGAATgtgattattgtaaaaaacGATTCTCTACGAAATATCAGTTACAACTTCATATCAGAGTCCACTCGGACGAAAAACCCTTCAATTGTGCAACCTGTGGCAAACGATTTTCGCAGAAATCCAGTTTGAAAAGGCACGAGATGATACACAAGGAAAGGATAACATATAACTGTAAACACTGCGACGAACAGTTTATACGACTGGATACCTTAGAAAAACATCTGAAACTTCATTCGGGCAAAAGCGCCTTCACTTGTCAACATTGCGACAAAACGTACAGCAATTATCATCGCTTGAAAACTCATATTGCCGAGCACACGGATGGGAAACGGTTCGAATGTGATTACTGTAAAAAACGATTCTCTAAGAAATATCAGTTACAACTTCATATCAGAGTCCACACGGATGACAGGCCGTTCACTTGTCGACACTGCGGCAAAGGTTTCACCCAGATGAAGACAGTGCAGCAGCACGAGAAACTTCACTCGGACGAAAAACCCTTCAATTGTGCAACCTGTGGCAAACGATTTTCGTCGAAAACCATTTTGACAAGGCACGAGATGATACACAAGGAGAGGATAAATTACAACTGTAGACACTGCGACAAACAGTTTATACGACTGGATACcttaaaaaaacatctgaaaCTTCATTCGGACAAAGGCGCCTTAACTTGTCAACATTGCAATAAAATCTTCAGCAGAATATCTAACTTGACAGTTCACTTGAGAATTCACACTGGAGAGAGGCCATACAAGTGTACTAACTGCGACAAGAGTTTCAAATCGATGGCAGAAAAAACCAAACATGAGAAGATTCATACAGGAGAGAAAACTCACAAGTGTGAATATTGCGATAAAGCTTATTTTTCCAAACACAGTTTGATGGATCATCTGATATCACACTCTGACGATTTGTGA
- Protein Sequence
- MPKMDEYTCTICLKKLRGGKEAFEQHLRTHTEEKPHTCQQCGESFNSKRMLSMHINVHEKKFVCKYCDKTYSNYHRLKTHVAEHTHGKRFECDYCKKRFSTKYQLQLHIRVHSDEKPFNCATCGKRFSQKSSLKRHEMIHKERITYNCKHCDEQFIRLDTLEKHLKLHSGKSAFTCQHCDKTYSNYHRLKTHIAEHTDGKRFECDYCKKRFSKKYQLQLHIRVHTDDRPFTCRHCGKGFTQMKTVQQHEKLHSDEKPFNCATCGKRFSSKTILTRHEMIHKERINYNCRHCDKQFIRLDTLKKHLKLHSDKGALTCQHCNKIFSRISNLTVHLRIHTGERPYKCTNCDKSFKSMAEKTKHEKIHTGEKTHKCEYCDKAYFSKHSLMDHLISHSDDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493764;
- 90% Identity
- iTF_01493764;
- 80% Identity
- iTF_01493764;