Basic Information

Insect: Trissolcus brochymenae
Gene Symbol: -
Assembly: GCA_030523145.1
Location: JAQQRF010000086.1:141287-143315[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.031 3.5 8.8 1.8 2 23 222 245 210 245 0.96

2 9 0.0015 0.17 12.9 2.0 1 23 251 275 251 275 0.98

3 9 0.0005 0.056 14.4 0.2 1 23 281 305 281 305 0.97

4 9 0.00045 0.05 14.6 0.4 2 23 312 335 311 335 0.95

5 9 0.0068 0.76 10.9 4.3 1 21 342 364 342 366 0.95

6 9 0.00046 0.051 14.5 0.7 2 23 374 397 373 397 0.95

7 9 1.9e-06 0.00021 22.1 2.5 1 23 403 427 403 427 0.98

8 9 6.3e-05 0.0071 17.3 0.9 1 23 433 457 433 457 0.96

9 9 0.00025 0.028 15.4 2.9 1 23 463 485 463 486 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.031	3.5	8.8	1.8	2	23	222	245	210	245	0.96
2	9	0.0015	0.17	12.9	2.0	1	23	251	275	251	275	0.98
3	9	0.0005	0.056	14.4	0.2	1	23	281	305	281	305	0.97
4	9	0.00045	0.05	14.6	0.4	2	23	312	335	311	335	0.95
5	9	0.0068	0.76	10.9	4.3	1	21	342	364	342	366	0.95
6	9	0.00046	0.051	14.5	0.7	2	23	374	397	373	397	0.95
7	9	1.9e-06	0.00021	22.1	2.5	1	23	403	427	403	427	0.98
8	9	6.3e-05	0.0071	17.3	0.9	1	23	433	457	433	457	0.96
9	9	0.00025	0.028	15.4	2.9	1	23	463	485	463	486	0.96

Sequence Information

Coding Sequence: ATGAGCGGCAAAAAGAATTGCGACTATCCGAAGCAATCGATGTCGATGGACCCAAACACCTCAGACAAGAGATCTGATTACGACCAGATCTTCCGGGACCTGAAGGATGACGACGGTTTCACCCTGTCGGAGTTCCAGCTGGACCAGCTGGATCCCCTGTCACCAGACACGATTGCCCTGACGAGTGACATCTTGTTATCGTCAAGCTCGCAGGATTCGTTGGAGAGCGAGTCCTTGGAGAAGGATTTGCCATGTGCCTTAGTTTTTGGGGTCTCGAAGGAGACAAGGGTGGAGGGCAGAGTTGCTCCGCGGAAGAAAAAGACCTTGAACGGTGATAAGTTCCCAGCGAAtccaaataacaataacagtAGCTCAGAAGTTGATAACGATAATCGGGTCATGACCGTTGTAGTTTCTACGAATAAGGTGTCAAATTTGACACAGATAGTTATTAATACGGGAAAGGAGGAACAGGTTTATCAGGGTAAAACTTCGGAGCTGCTCCAGGCGACGGGCAACCTACCCCTGCCGCCGGGGTTGGACGCGTCGAATAGTTCCTACAGCAAGGGACAGGATCTAGTGATATCCGAAGCATTAGCAGAACTGGGCATTACTGATGACGCCTTGCAGCCCAGCAACGTCACGGACCACGGCAAAGTTTGGCACTGTCCGCGCGGCGACTGTGCCAGAAAGTTCACAAGACTTTATGCTCTCAAGTGCCATCTTCTTACACATTACGGTGTTAGACCTTTCAAGtgTGACTTCGGAGGCTGCACTTGGTCCTTCTTCTCAGAATTCAAGCTCAAACGTCACAAGGAGACtcatctgaagaaaaaagattacGTTTGTAAGATCGCGGGTTGCGAGCGCCAGTTTACGACCATCTACAACTTGTGGAGTCACGAAAAGTTGCATAGCAGGCCGAGTAAGATTGTGTGCCACGTGCCAGGTTGCGAGGAAAAGTTTCAGACGAAACGAGCGCTCGAGTTACACATGAAGAGCCACGACCAGAGCCACGCGCCTTACGTCTGCAAGCATGAAGGCTGCGATAAGCGTTACTATAGCAACAACGCTCTGACGTCGCACCAGCGTTGTCACAGCTACAAGGACACCGACATCAAGTGCTCGTGGCCGGGTTGCAACAAGGTATTCGACAAGCCCTGTCGTCTCAAAGCTCACGTTCGATCGCACACCGGTTGCAAGCCCTACACTTGCAACTTTCAAGACTGTCAGTGGGCATTTTCTTCCTCCAGCAAACTGAAGAGACACCAGAAGAAGCACACAAACGACCGCAAGTTCGTTTGCGACCTGGCCTCGTGTGGCAAGGCATTCATGAGGTCCGAGCATCTGAAGGAGCACAAGTTGACCCACAACGAGGGACGGTTTTTCCGCTGCGACCTTTGCGATTCTAAGTTCTCAGCTAAGAGCAGTCTCTACGTTCATATTAAAAAGCATCACAAAAAGGTGTCGCCGTACAAGAACGAGGCGCTTAGATCCCACAACCAGATCTCCTCTGAGCACAAAGCAGATGGTACAGATTACGTTTTTTACACCGACAAGATGATCATGTTGGCTCCCTGCGAAACAGTGATTTTGAACTCGAAGGAGACGGAAGAATCTGCGACAAATTCGCCGGACGAGTTGAGTTTACAGGAAAATGTGATACTGGACAGCAATCAGGGTTCTGCAAGGACGCGACTCACGCGCTACGACGTCTCAAAGATGAAGGCTGGAGTGAGCGGGCCGTTGGAGACCGAGATCCAGGCGGATGATATTTTAAACCCGACTGACATTAGTGAAGGACTGCTATTTACCGAGGACTTGtcttcaatttattatcacgATACGATGGACAGCGCTGAGTGTCAGATCTTGCTGCTTGACTCCAATGCCGCCGAGGGTGTTATCAGTCTGAaggattttaattaa
Protein Sequence: MSGKKNCDYPKQSMSMDPNTSDKRSDYDQIFRDLKDDDGFTLSEFQLDQLDPLSPDTIALTSDILLSSSSQDSLESESLEKDLPCALVFGVSKETRVEGRVAPRKKKTLNGDKFPANPNNNNSSSEVDNDNRVMTVVVSTNKVSNLTQIVINTGKEEQVYQGKTSELLQATGNLPLPPGLDASNSSYSKGQDLVISEALAELGITDDALQPSNVTDHGKVWHCPRGDCARKFTRLYALKCHLLTHYGVRPFKCDFGGCTWSFFSEFKLKRHKETHLKKKDYVCKIAGCERQFTTIYNLWSHEKLHSRPSKIVCHVPGCEEKFQTKRALELHMKSHDQSHAPYVCKHEGCDKRYYSNNALTSHQRCHSYKDTDIKCSWPGCNKVFDKPCRLKAHVRSHTGCKPYTCNFQDCQWAFSSSSKLKRHQKKHTNDRKFVCDLASCGKAFMRSEHLKEHKLTHNEGRFFRCDLCDSKFSAKSSLYVHIKKHHKKVSPYKNEALRSHNQISSEHKADGTDYVFYTDKMIMLAPCETVILNSKETEESATNSPDELSLQENVILDSNQGSARTRLTRYDVSKMKAGVSGPLETEIQADDILNPTDISEGLLFTEDLSSIYYHDTMDSAECQILLLDSNAAEGVISLKDFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01493836;
90% Identity: iTF_01493836;
80% Identity: -