Tbro011703.1
Basic Information
- Insect
- Trissolcus brochymenae
- Gene Symbol
- ZNF341
- Assembly
- GCA_030523145.1
- Location
- JAQQRF010000655.1:2472-4958[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.7 1.9e+02 3.4 1.0 1 23 45 67 45 67 0.84 2 12 0.00016 0.018 16.0 3.2 1 23 212 234 212 234 0.99 3 12 5.6e-06 0.00063 20.6 0.4 1 23 240 262 240 262 0.97 4 12 0.01 1.2 10.3 1.3 1 23 287 310 287 310 0.96 5 12 0.039 4.4 8.5 0.3 1 23 316 340 316 340 0.97 6 12 1.2e-05 0.0014 19.5 0.7 1 23 345 367 345 367 0.98 7 12 0.0039 0.43 11.6 2.9 1 22 379 400 379 403 0.90 8 12 0.0019 0.21 12.6 3.2 1 23 405 427 405 427 0.99 9 12 3.9e-06 0.00043 21.1 0.3 1 23 433 455 433 455 0.96 10 12 0.00015 0.017 16.1 1.9 1 23 461 483 461 483 0.97 11 12 0.019 2.1 9.5 0.2 10 23 503 516 499 516 0.94 12 12 0.14 16 6.7 4.5 1 19 522 540 522 543 0.89
Sequence Information
- Coding Sequence
- ATGGCGAACATAGCTTTCGACGATTTGAcaaACGTCCCTTTTGACAATCAAGTTGTGCAATCTTTGTTGGACTGTTCTACCCTTGTTGCAGAATATGAACAAACAGtgATTGATCAGTCGGAGAGCGACATTTTCCAATGTGGCAAATGCAAGATCCAATTCATGTCCCTATTGGTGTTTCTGATGCACAAAAAAGAGCACGCAAGCAAAACGCCAGAGCCAGCAGTTGACATTTCGCCGTTCATTGTAAATGATCCTGATATTTGTAGTGATAGCATCACGACAGATGATACTTTTGATCAACAAATGTTGGAACAAGATGGCCAACTTGATAGATCAATCATTCTGGGAGAAAACGATATGCTTTTTAAcatCGAACAAGAAGATACGAGTCTAAATTCCAGTTCTGGATTTAGCGTTCCCATTATCTTAGCTTCAGACAGTCTTCAGACTTTAGAAGGCACAAGCTTGTCGTCATCAAAGCAATTATTTGAAGAGGATACAAAGTATTGTGATATTAAAGACAATGAGGTGGCGatcaaagatattaaaatgGATTCCACAATTCAAGACGAGACTGGGAAGTctttaattattgattgtaATCAAAGGaatgtaatacaaaatttaaagtacAAATGTAGTTATTGTGAGAAGCAATTTGCGAAAAAGTTTTACTGGCAGCAACATGAACGATCTCACACTGGCGAAAAACCTTATCAATGCATTGTTTGTGGACGACCTTTTGCTCAGAAATCTAACGTTAAGAAACACATGTCTTCGCACAAAGTTTGGCCGGGTACAGCCATTCATTCGTTGCCTCCCCagGCTCCAGCAGACGGTAGCATTGATCGGACATATCACTGTCAATTTTGCAAGGAGATTTTTGATTCCTACAAAGCTCTGAAAGGCCACCTGATAGTATCTCATCTAACACTGAAAGTTTATAAATGCGTGCAAGTAGGTTGCAGCAAAATGTTTGAAgagttgaatgaatttttggaGCATACGCAAAGTCATAAGAAAGTAGAGTACCGTTGCCACGTGTGCGGCGAAGCGTTCAATACACTGTCGGATCTGGGACTGCACCAGTATTCACATTCAGTTGAGAAGACAAAGTCCGCAGAAAAGTATTACTTTTGTAGTGTATGCAAATcatcgttttcaaatttgaaggCATTGCAACATCACACGGACACGACAACTCACGATTACACCTGTCCacattgcaacaaaatttttctcattgaaCGATTTTTACGTCGGCATTTAAAAACGCACAATTCCAGTGCCAAGTTTGCCTGCAACGACTGTGGCAAGGCATTCAAAACTGAACAGTATTTGGCTAATCATAAGCTGATCCACAGCGAGGAGACGCCTTTTCATTGCACGTTGTGTCCAGCACGATTCAAAAGGAAAGATCGCCTGGGTCGTCACATGTTGATCCACGACTTAACCAAAAGACTTAAATGTCCGTACCAAAATTATTTAGCGTGTATGAGCGAATTCTCGAGACCTGACAAACTTAAACGTCACCTTCTTACGCACatcaatgtaaaaaagttCAACTGCAGTCAGTGCAATCGCAATTTTCACAGGACACAAGCTCTTAAACACCATGATGTTCATAAACATGGAGTCAAATGTGAATTGTGTCTTCATtttttaaaaacaaaggaaCAGATTTCAGCTCATAACTGTGATCAAGCAATTGGATTCAAGAAACAGAGTTCACAGCTACCAAAAAAGTTGACAGGTTCCTTTAAACCGAAAAAACCAACACCTAAAAAGCAAATTCTGTCGaaagttgtttcaatttaa
- Protein Sequence
- MANIAFDDLTNVPFDNQVVQSLLDCSTLVAEYEQTVIDQSESDIFQCGKCKIQFMSLLVFLMHKKEHASKTPEPAVDISPFIVNDPDICSDSITTDDTFDQQMLEQDGQLDRSIILGENDMLFNIEQEDTSLNSSSGFSVPIILASDSLQTLEGTSLSSSKQLFEEDTKYCDIKDNEVAIKDIKMDSTIQDETGKSLIIDCNQRNVIQNLKYKCSYCEKQFAKKFYWQQHERSHTGEKPYQCIVCGRPFAQKSNVKKHMSSHKVWPGTAIHSLPPQAPADGSIDRTYHCQFCKEIFDSYKALKGHLIVSHLTLKVYKCVQVGCSKMFEELNEFLEHTQSHKKVEYRCHVCGEAFNTLSDLGLHQYSHSVEKTKSAEKYYFCSVCKSSFSNLKALQHHTDTTTHDYTCPHCNKIFLIERFLRRHLKTHNSSAKFACNDCGKAFKTEQYLANHKLIHSEETPFHCTLCPARFKRKDRLGRHMLIHDLTKRLKCPYQNYLACMSEFSRPDKLKRHLLTHINVKKFNCSQCNRNFHRTQALKHHDVHKHGVKCELCLHFLKTKEQISAHNCDQAIGFKKQSSQLPKKLTGSFKPKKPTPKKQILSKVVSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493811;
- 90% Identity
- iTF_01493811;
- 80% Identity
- -