Basic Information

Insect: Trissolcus brochymenae
Gene Symbol: -
Assembly: GCA_030523145.1
Location: JAQQRF010000106.1:54494-57285[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00077 0.085 13.8 3.0 2 23 185 206 185 206 0.96

2 12 0.26 28 5.9 3.0 5 23 213 232 210 232 0.91

3 12 0.00031 0.034 15.1 4.1 1 23 241 263 241 264 0.95

4 12 0.11 12 7.1 0.1 2 23 270 291 269 291 0.96

5 12 0.0012 0.13 13.3 0.8 1 23 297 319 297 319 0.98

6 12 0.0004 0.044 14.7 0.1 1 23 322 345 322 345 0.98

7 12 0.00014 0.016 16.1 1.0 1 23 360 384 360 384 0.91

8 12 0.055 6.2 8.0 1.3 1 23 398 421 398 421 0.95

9 12 0.44 49 5.2 2.9 1 23 427 451 427 451 0.95

10 12 0.00048 0.053 14.5 0.1 2 23 458 480 457 480 0.91

11 12 3.2e-08 3.6e-06 27.6 1.6 1 23 486 508 486 508 0.97

12 12 0.0003 0.033 15.1 7.4 1 23 514 537 514 537 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00077	0.085	13.8	3.0	2	23	185	206	185	206	0.96
2	12	0.26	28	5.9	3.0	5	23	213	232	210	232	0.91
3	12	0.00031	0.034	15.1	4.1	1	23	241	263	241	264	0.95
4	12	0.11	12	7.1	0.1	2	23	270	291	269	291	0.96
5	12	0.0012	0.13	13.3	0.8	1	23	297	319	297	319	0.98
6	12	0.0004	0.044	14.7	0.1	1	23	322	345	322	345	0.98
7	12	0.00014	0.016	16.1	1.0	1	23	360	384	360	384	0.91
8	12	0.055	6.2	8.0	1.3	1	23	398	421	398	421	0.95
9	12	0.44	49	5.2	2.9	1	23	427	451	427	451	0.95
10	12	0.00048	0.053	14.5	0.1	2	23	458	480	457	480	0.91
11	12	3.2e-08	3.6e-06	27.6	1.6	1	23	486	508	486	508	0.97
12	12	0.0003	0.033	15.1	7.4	1	23	514	537	514	537	0.96

Sequence Information

Coding Sequence: ATGTCAGCCGACGACGACGTTTCAGAGGAGCATCTTGATCTCATGACACTGTCAGCGTTTGACAGTGGTCAGgaCTCTGTCTTAACCTGCAAAACTGACGttgattatttgcaaaaatgtgtGGACAGCTTAGAGAGCAAGGATTCGGGTGTGCACCTGTCCCCAAGTTCCATAGATATTTGTTACTCGGACACCGACATCACGAGTCTGGATCAATTCAAAAACTCAAACGCAGACATGAGTTTCATCAATGTAGAAAATATCTTTGTCGAGTGCAATGACAACATGGACTCCGATGAGCAGTTTCGTCTCTTGGAGAACGAGATCTCGTTGATTCAGCAGGACTACATGACCTCTGACCTGAACATGAACCCAGAGAACACTATTCTAAACAACATAACGAGTTGCGATGCCATCGATCCAATGTTTCTCCAGCAGGACGTCTTCCTCACGGATGAGTTGACTTTGGCTGAATCAGAACAACAAGAAACCGTGGAGACTGTTCCAAAAAAAGAGGGCACGGACGAACAGGAGAGTCATGAGTATGTGAATGAGTGCACGGAGTGCTCGATGACGTTTAGGTATAAGCGCCACTTTGACCGTCACATGGAAGGTCACAAGAAGAACGATTGCATCCACTGTAATGCAAAGTTTGCAAGAAGGAAACACCTTGACGTGCACTTGTTTCGGATCCACGGTGAGACGTCCCACAGGTACATTTACGCTTGCGACGGCTGTGTCAGAAGTTTCCCGAAGAAGAGTTTGTTGCACAGGCACAGGTCGAAGCATCATTACAAGGAGGGCAAGGTGTGTCCAGAGTGCGGAGATATCACGAAGAGCGACGCGGAGCTCGAGGAACATAAACAGAGGCATGATGGCGAGAAGTTATATAAGTGCTCGAGGTGTCCTAGGGCATTCAGGATCAAGCAGACGTACGTCATCCATATACAGAACCATGACAATTATAAGTGTCCGACTTGCGAGGATACTTTTGCCTCGAAGAAGGCCGTTAACGAACACATGAAGGTCGCACACAATCTACAGAAAAAGGCGAAGAAATCTGAAGATGcTGGTCCTTATTTCTGTAAGGATTGTCGTCAAGTGTTTGTGAAGAAAAGCAGCTACTTGCGCCACCTAGAGACGGCAATTCACCTGAGCAAAACAAATGAGGAGGCGCCACTGAAGGCAATTTTCAGCTGCCCGATCTGCTCCAAGAATCTCACATCGAGGCAAGCGTGCGTGCAACACGTGCGACGTGTGCACAAGGGTGAGAAGAAGTTTGTCTGTGATATTCACGGTTGCACATTCCAGTGCGCCTACAAGAACGATCTTGCTAGGCACAAGCAGCTCCATGTGGAGGAACGCAATGTCGTATGCGAATACTGCGGCAAGACCTTCACCAGTGTTAGTATACTCAAAGACCACGTGCTTTATGTCCATAACAAAGAGAGGCACTTTGTTTGCGAGGAATGCGGCAAGTCCTTCAAGAGGAACAGTCTACTCAAAAGACACAAGCTCTCTCATCAACAGTTCAGACCGTTTTCATGCCAGCAATGTAGCGCTGCGTTTAAAAGATCGCACCATTTAACCAGACACATGGAGAGTTGTCACAGTTTGACTatggaaaaaaagagaaaaGTTGTCAAGTTGATGAAAACCGAAGATGGAGTGCTAGTTCCCGTCCCAGAAAAATTACGCAAAATCCGTCACAAAGCacgagaaacaaaaagcaatgCCGAAATTTCTAACTTGACTATGGACCCGGTCGTAACATCGGAAAAATCAAGTACTGAAGAACAAATTGACCAAGATAAGAAGAGTACAGACCCaagtgatgaaaattgtgataatCCCGAAAGTCAGGCTGTGTCGCAGGTTCTGTCCCTCGTGGATATTAATTCGGGTCAAGTGGTCACGGTGCAGGTCACAGATCGCGATTCGTGCTCTATGAATGCCTTGGTCGATCAGTTCGAAGCCAATTGTAACGAGATGTTTGGGCTCACGGGACTTCAAAATCTTGAACTACAAAACGGGATCATTCATATGGACAACAACTATTGTGGATCTGAATATTACTCGGAGTTGCACATGCTCGAAAACGATGAACCCTCGTTGCTCCTAGATTCGGACTCTAATAAAGCCGATTCGTTACCTACAATGGAACATTATCCGTCGCAGTCCTTACTTTCGTACCTCAACGCTTGA
Protein Sequence: MSADDDVSEEHLDLMTLSAFDSGQDSVLTCKTDVDYLQKCVDSLESKDSGVHLSPSSIDICYSDTDITSLDQFKNSNADMSFINVENIFVECNDNMDSDEQFRLLENEISLIQQDYMTSDLNMNPENTILNNITSCDAIDPMFLQQDVFLTDELTLAESEQQETVETVPKKEGTDEQESHEYVNECTECSMTFRYKRHFDRHMEGHKKNDCIHCNAKFARRKHLDVHLFRIHGETSHRYIYACDGCVRSFPKKSLLHRHRSKHHYKEGKVCPECGDITKSDAELEEHKQRHDGEKLYKCSRCPRAFRIKQTYVIHIQNHDNYKCPTCEDTFASKKAVNEHMKVAHNLQKKAKKSEDAGPYFCKDCRQVFVKKSSYLRHLETAIHLSKTNEEAPLKAIFSCPICSKNLTSRQACVQHVRRVHKGEKKFVCDIHGCTFQCAYKNDLARHKQLHVEERNVVCEYCGKTFTSVSILKDHVLYVHNKERHFVCEECGKSFKRNSLLKRHKLSHQQFRPFSCQQCSAAFKRSHHLTRHMESCHSLTMEKKRKVVKLMKTEDGVLVPVPEKLRKIRHKARETKSNAEISNLTMDPVVTSEKSSTEEQIDQDKKSTDPSDENCDNPESQAVSQVLSLVDINSGQVVTVQVTDRDSCSMNALVDQFEANCNEMFGLTGLQNLELQNGIIHMDNNYCGSEYYSELHMLENDEPSLLLDSDSNKADSLPTMEHYPSQSLLSYLNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01493820;
90% Identity: iTF_01493820;
80% Identity: -