Basic Information

Insect: Trissolcus brochymenae
Gene Symbol: -
Assembly: GCA_030523145.1
Location: JAQQRF010000285.1:20717-23539[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.017 1.9 9.6 0.1 3 23 225 246 223 246 0.96

2 10 4.1e-06 0.00046 21.0 0.7 1 23 252 274 252 274 0.99

3 10 1.9e-07 2.1e-05 25.2 0.7 1 23 280 302 280 302 0.99

4 10 0.0053 0.59 11.2 2.6 1 23 308 330 308 330 0.99

5 10 4.5e-06 0.0005 20.9 0.2 1 20 336 355 336 356 0.96

6 10 0.026 2.9 9.0 2.4 1 23 365 385 365 385 0.94

7 10 1.1e-06 0.00013 22.8 0.5 3 23 393 413 392 413 0.98

8 10 9.6e-05 0.011 16.7 1.1 1 23 419 441 419 441 0.98

9 10 0.0014 0.16 13.0 2.6 1 21 447 467 447 470 0.96

10 10 0.027 3 9.0 0.4 3 21 478 496 476 497 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.017	1.9	9.6	0.1	3	23	225	246	223	246	0.96
2	10	4.1e-06	0.00046	21.0	0.7	1	23	252	274	252	274	0.99
3	10	1.9e-07	2.1e-05	25.2	0.7	1	23	280	302	280	302	0.99
4	10	0.0053	0.59	11.2	2.6	1	23	308	330	308	330	0.99
5	10	4.5e-06	0.0005	20.9	0.2	1	20	336	355	336	356	0.96
6	10	0.026	2.9	9.0	2.4	1	23	365	385	365	385	0.94
7	10	1.1e-06	0.00013	22.8	0.5	3	23	393	413	392	413	0.98
8	10	9.6e-05	0.011	16.7	1.1	1	23	419	441	419	441	0.98
9	10	0.0014	0.16	13.0	2.6	1	21	447	467	447	470	0.96
10	10	0.027	3	9.0	0.4	3	21	478	496	476	497	0.93

Sequence Information

Coding Sequence: ATGGCGAGTTTTGAGCAGATGGTCGCGAACCATGTTTCAACTCCTGAGCAAAACCAGGACGAGGTCCATCTTACAGAACTACTTCCGGTGGAACAGTCCCGGTTCACAGAGACCTGCCGAGACGACCAGGAGGGCACCGACGCCCTCAAAGTTTTGCGTAGCTATCCGCACTGCAGCAACGATGAGTTCAACGCGCAGTTTAAAGTTTGTGAGGATGTCGAAGAGGGTACCGGGAATGGGTACTCAGTGAAACGAAGGCCGGAGAGGTGGAAACACATCTCGGAGCAGATGGACAAGGAGGAATCGGCTGGGAAAGCCCGCAATTGtacgaaaatcaaaaaagccAAAGAGGTGGAGGAACAGAAGAAGCAAAACACCGAGGACGAGATCAAAAGAACCGAAAAGAGCTCAGCTAAGAGGCAACGgaagatgaaagaaaaggTAACACGGCGAGCGGTCAAGCCGACGGTGGTCAAGACACTGGACAAGGAGGTGGCAGACACCATTGACGCCATCATCCAGAAGACTTACCTGCTGGAACGGGAGAACAACAACGTGCTAAATATCAATAACAAGTTCATGTACCGGCTGGTGAGCCCGGAGTCGGCCGAGCCAAGCGCCAACACCGAGGACCAGAACGGTGACAAGGCTAAGCTGTACAAGAAGTACGGCTGCGTGATGTGCGACGCCAAGTTTAAGGGCACAGGGGGTCTGAGGAACCATTACAAAGTGGTGCATGGCGCCGGACCGTCCTTCAAATGCAACGAGTGCGGCAAGGAGTTTCCCCTGAAAGAGAGACTGAAATTACACGTGCGCACCCACACGGGTTTCCGACCCTACAAATGCAACGAATGCGACAAGACCTTCGCCCGCGGCGGCCAACTGGCGCAGCATCGCCGCACTCACAGCCAGGTGAAGCCGTACCGGTGCACCCTCTGCTCAGGCATGTTCACGTGCTCTGCGAACCTGTCGGTTCACATGAAGCGACATAATGGACAGAAGGACCACAAGTGCGAGATCTGTGGACGCGGCTTTGTACGTCGCGACGCGCTCAAGAAACATCTCGAGTGCTTGCACCAAGACGTCAAGTCGTTCCTGTGTGTGATCTGTAACAAAACATTCAAGGGACACTTGCCACAGCATATGAGGACTCATGCTCAAGACAGGCCGCACGGCTGCGCCACCTGCGGACAGAGATTCGCACAGAAGTCCCAGCTTACGGTGCACCAGAGAACGCACTCTGGACAGAGACCATTTAGATGTGTCGTTTGCTGGCAAGCTTTTGCCCATTCAACCGCTCTAAAGCTCCACACAAGACGACACACGGGAGAAAGACCATTTAAATGTGTTGAATGTAACGCTGGCTTCACCCAACTACCTCATTGGAAGAAGCATATGCGATGCATCCACGGCAGAAACGAGCCATACGGCTGCAAATACTGCAAGAGCTTCTTCCGAATCAAAAGTGACCTTGAGGTGCACGAGAAAAGCTGTCTGGAAGCTTCATCCAAGGAGTCGAGCGCCGAGTCAAACGCTTTgaagaattcaaaattctCGGGAATGTCGATCGAAAAGATGAGATTACTATTGGCAGTGCTTTTGAAACGGATCTCAAAACCCGAGAGACTCGAGGAACTTGGATTTGGCAAACGGTTGATCGACGAGATTCTCGAGGATTCACTGATAGCGGCTGGTAAAGATCCGATCAAGTCCGACGACCCCACAGAGGAGCACGAAACTCTGCGGAGCAACCTGGAGATGTTTCTCGAGTGGACGGTGCCTCAGGAGCACTGGAAAAATTtcatgaagaaaaagaaaacgccCGAGCAGATTCTCAAGACTCTAACGGCAACGTAG
Protein Sequence: MASFEQMVANHVSTPEQNQDEVHLTELLPVEQSRFTETCRDDQEGTDALKVLRSYPHCSNDEFNAQFKVCEDVEEGTGNGYSVKRRPERWKHISEQMDKEESAGKARNCTKIKKAKEVEEQKKQNTEDEIKRTEKSSAKRQRKMKEKVTRRAVKPTVVKTLDKEVADTIDAIIQKTYLLERENNNVLNINNKFMYRLVSPESAEPSANTEDQNGDKAKLYKKYGCVMCDAKFKGTGGLRNHYKVVHGAGPSFKCNECGKEFPLKERLKLHVRTHTGFRPYKCNECDKTFARGGQLAQHRRTHSQVKPYRCTLCSGMFTCSANLSVHMKRHNGQKDHKCEICGRGFVRRDALKKHLECLHQDVKSFLCVICNKTFKGHLPQHMRTHAQDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCVVCWQAFAHSTALKLHTRRHTGERPFKCVECNAGFTQLPHWKKHMRCIHGRNEPYGCKYCKSFFRIKSDLEVHEKSCLEASSKESSAESNALKNSKFSGMSIEKMRLLLAVLLKRISKPERLEELGFGKRLIDEILEDSLIAAGKDPIKSDDPTEEHETLRSNLEMFLEWTVPQEHWKNFMKKKKTPEQILKTLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01493797;
90% Identity: iTF_01493797;
80% Identity: -