Basic Information

Insect: Trissolcus brochymenae
Gene Symbol: -
Assembly: GCA_030523145.1
Location: JAQQRF010000013.1:97364-101984[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.068 7.6 7.7 2.6 3 21 609 627 607 629 0.92

2 17 0.017 1.8 9.6 0.6 1 19 635 653 635 655 0.92

3 17 1.2 1.3e+02 3.8 0.7 2 23 662 683 661 683 0.95

4 17 4.8e-05 0.0054 17.6 1.4 3 23 692 713 691 713 0.98

5 17 0.0026 0.29 12.2 2.1 1 23 720 743 720 743 0.95

6 17 8.3e-05 0.0093 16.9 0.7 1 23 749 772 749 772 0.94

7 17 0.41 46 5.3 2.1 2 23 780 800 780 800 0.97

8 17 3.4e-07 3.7e-05 24.4 1.7 2 23 806 827 805 827 0.97

9 17 2e-06 0.00022 22.0 0.2 1 23 833 855 833 855 0.99

10 17 0.00056 0.062 14.3 2.1 2 23 867 889 866 889 0.95

11 17 0.12 14 6.9 0.7 1 23 895 918 895 918 0.93

12 17 0.031 3.5 8.8 2.9 2 23 941 963 940 963 0.93

13 17 0.00019 0.022 15.7 0.8 2 23 970 992 969 992 0.96

14 17 2.5e-05 0.0027 18.6 1.6 2 23 1000 1021 999 1021 0.97

15 17 0.0011 0.12 13.4 2.3 1 23 1027 1050 1027 1050 0.96

16 17 1.5 1.6e+02 3.5 4.3 2 23 1057 1078 1056 1078 0.96

17 17 0.0084 0.93 10.6 2.6 1 23 1084 1106 1084 1106 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.068	7.6	7.7	2.6	3	21	609	627	607	629	0.92
2	17	0.017	1.8	9.6	0.6	1	19	635	653	635	655	0.92
3	17	1.2	1.3e+02	3.8	0.7	2	23	662	683	661	683	0.95
4	17	4.8e-05	0.0054	17.6	1.4	3	23	692	713	691	713	0.98
5	17	0.0026	0.29	12.2	2.1	1	23	720	743	720	743	0.95
6	17	8.3e-05	0.0093	16.9	0.7	1	23	749	772	749	772	0.94
7	17	0.41	46	5.3	2.1	2	23	780	800	780	800	0.97
8	17	3.4e-07	3.7e-05	24.4	1.7	2	23	806	827	805	827	0.97
9	17	2e-06	0.00022	22.0	0.2	1	23	833	855	833	855	0.99
10	17	0.00056	0.062	14.3	2.1	2	23	867	889	866	889	0.95
11	17	0.12	14	6.9	0.7	1	23	895	918	895	918	0.93
12	17	0.031	3.5	8.8	2.9	2	23	941	963	940	963	0.93
13	17	0.00019	0.022	15.7	0.8	2	23	970	992	969	992	0.96
14	17	2.5e-05	0.0027	18.6	1.6	2	23	1000	1021	999	1021	0.97
15	17	0.0011	0.12	13.4	2.3	1	23	1027	1050	1027	1050	0.96
16	17	1.5	1.6e+02	3.5	4.3	2	23	1057	1078	1056	1078	0.96
17	17	0.0084	0.93	10.6	2.6	1	23	1084	1106	1084	1106	0.98

Sequence Information

Coding Sequence: atgtcgAAACCACGCGACGGTAAAGACTACAGCGAGATGGAGAACCAGTTGTCAACGTTTTTGATAATCGACAACGAGAGTTACGCGAGACAGCAGTTGTTCAAGAGCAACAGTCTGTCGCCGACGAAGAGCCAGATGATGCTCAAGTCGAAGAACGCGAGTCAGATAACGAACCTCCAGGATCTGAAAAAAGTAACGCCCGCGGTGCGTCTGTTGGGCCAAAAAGCGGAGAGCCTGAACGAGCTGCGGAAAAATTTACAGCCCGACAAGAAGATAGCTCCGCGGGTTCGCCAGGAGATGCAGAAGTACTGTCGCGCATGCGCGGGTCTCAAAGTCCCTCTGGTGAACATCTTTAGCGATAAGGGCGTTCAGATGCGGCTGAACCAGCAGATGAAACACCTCGAGGACATCAGCCAGGACAGCCTGACGACGCAGATATGCATGGACTGCATCTGTGACCTCAAGATGAGTTACAAGTTTTTCATGCAGATTAAAAAAGCCGAGGTCAAACTGCGGACCATTCACTCGTCTTTGGTCGAGGTTTATGACAAAGAGGCGACCGAGTCGCACAATGTAATCGAGCACAGTTACTTCGGCCAGAACATCAAAGAGGAGGAGGAACCCGAGCTAAACGAGGCAACATTTGAGGACGACTCGATCGAAGAGTTTGACCCGGACGATCCACCTTTTCAGACGTCCGAGGCCGAGGAGATGCATTCCGAGCTGGAGAACGGCGACAAGAAGAGCAAGGTGCTCGGGAGGCTCAAACATTATGAGGGCTTGAAGTCGTACATCACTGTACCGAAGGAGCAGACCATCTTGGATGCGAAGGTTCAGAAGGTGGCTGCGGTACCCAAAGTGAACTCTGTTATGAATGACGAGATGCTGCTGAAGACTCTGGAGTCTTCGGTGGAGAGCAACGATGATTTGTCGAACGACGGACTGAGGCAGTCGACGACGGTTGAACAGGCGAAAGGCAGTGAGGAGAAAGTGCAAAAGGAAAGGACGCAGAAGGTCAGCAATGTTCAGGGCATTCCGAACCTGCAGAATGTTATCAGTACCACGACTAAGGAGGATGGTATCATGTATGTTACGATGAAGGGATCGAAGCCCAATGAACTGCTCTTGGTGAAGGTGAAAAAGATGGACAAGCCAGTACAGGACTCGAAAAAGATAGTCATGTCCGAGAAAACTCTAAATAAAACGCCGATTGACATCAAACCGATCGGCAAGTTCCTCTCAAAGTACGAATCTCTGATGAAGGACAAAGatctgttttcaaataaaaagtctgAGGAGCGGGAACAGATCATTGAAGAGCAGATCGAGGAGTACAAAAggaagagggaaaaaattttaggGAGAACTGTGTCGAGTAGCGTTGAGAGTATACGAATGAAGGAGGACGAGATGAAGATGGATCTGGACACCGACTCGATAGACCTTGCGAAGGAGTTGGTCGAGGAGGATACCAAAGAGAATGCCCCCTTTGATGGTTCGTTCTCGGACACGATCATTAACGAGGTGAGGTATAATGATAAGACTTGGGAAGAGGAGACCAAAGTTGTCATAGAGGAGGAGGAGGTGGAGGAGCAAACGGTGATGAAGGAGGAACTTCTGGAGGAGGAAAAGGTTGAAAAGGATGAGGACAGGCTCGCGAAGCTCATCGGCGAGACGGAGTATCTACAGGACTTTCTCGAGTACCTGAAATCCCGTCGCATTGTGATAACTCGTCTTAAGGATGACGACATCGTTCAGCTTTATGACGGTAGGTATAAAAAGGACCCCTTCGATGACAGTTACAACGACAAGCTGACCCTCGACTGTGACTTTTGCCTGCGCACTTTCACCAGCAAAGAAAAGCTTGAGGACCACGTCAAGTGTCACGACTTCAAGATCCTGCACTTCTGCGAGGACTGCGGCGAGGAGTTTTCAACGAACAAGGCACGACGAAATCACAATGTTATCTGTCTGAAGAAGCTGGTCTGTAGGTACTGCAACGTCGTGCTTGAGTCCAAGGGCAAGAAACGTCAGCACGAGCAAAAACACTGTGATAACATGTACGGCCAGTTGTGCGACATCTGCGGCGAGAAATTCAAGCACCAGGGCACGTTGGACCAGCATATCAAGACCAGGCACATGGACTGGgagaaaatatttcagtgtCCGAAGTGTCCGAAGAAGTTTGCCTTCAAGACCAAACTGAGCTTTCACCTGAAGTCGGTGCACACGTCTGTGAGGGCGTACCTCTGCGAGGATTGCGGGGCTGATTTTAAAAACCCCGCGAGTCTCAGGCATCATCGTATCAGGAAACATCAGCCGATCGGTAACAAGAGACAGTGCTCGGTTTGTAGCAAGATGGTGCCGTTTTATAGTCTGTCGAAACATATGCACACACACAAGGAGTACTCGATCAAGTGTCCCTATTGTGATAAGATGTTCAAAAACACATCCACTTTGAAGCAGCACACGAGGATACACGAAGACCAACGACAGTACAGATGTGATACATGTGGAGTTGGATTCAACAGGAGAGACGGGTTGCGTCTGCACATGCGCGTGCACGAGAAGACTGACAGTCGTGGTTTGAAGGAGTGTTCGTGCCAGGTTTGCGGCGAAAAGTTTCCGAACCATTCGATGCTTGTGATCCATCGCAACCGAGTGCACAAGGACGGTCGTCACTACACCTGTCGGATTTGCAATCGGTCCATGATATCGGCCAGATCTCTCGACTGGCACCTCACGCATATCCACAACGAGGCCTCGACTAGGGCCAAGGAAGATAGCAACGCGAGCGGCTCGTCCGAGTCCAAACGAGTCTCGTGTTACCATTGCAACAAAACGTTCAAAACTGAGATGATCTTACGGACGCACGTGAAAAACACTCACACCCAAAAAGACCCTGTTAAGTGTCTGGATTGCGATCAGATGTTTACTTCGGAGGTCCGTCTGAGGCATCATATGATGGTTGAGCATAACCGGTTGGAGGGAACTCTCCAGTGTCCGCACTGTCCCAAAAGatttgttaatcaattaaGaTTGAAAACCCACATGATATCACACTCGGAGGAACGTCCGTACACATGCGAGATCTGTGgctttaatttgaaaacaaagataCAATTAATAAAGCACCATCAGAACAGGCACAGCGATGAAAGGCCGCTCAAGTGTCGTTTCTGTGATTGGCGTTGCAAGCAAGTGAGTGCTCTAGTGTGCCATGAGAGGACCCACACAAACGAGAGGCCTTACTCGTGTAGCGTCTGCCGACAGCGGTTCAAGTACCTCGGTGACAAGAACAAGCACGAGAGGAGACACGAGAGCCTCGGAGGGACCGGCTTCAAACGAAACagtaaaattaatcacaaacGCCTTAAGGTGGAGCACGAGGGAGAAACGTCAGCCTCGGAGCAAGACGAGACGATCATCGGACAGCCAATCACCGAGGTGCTTGCAACTTCGGAAGTCGACGAGGGCCAATACGAAGAGGCTACCATCAAATTCGAAACTCAGGAGCTGACGGAGTACGAGACATACGAACAGGATTTCGAAGAGACGTCACAGGAGGCCTCCGAGGCCCAGGAGGTGATTATGAATATGGACGAGGACGGTCACATCTACACCGAGGAGGTCACAGCGGACAACATCGAGTCCACGTCCTCCTCGGAGATCATAAGCGGTGACCTCATGACCAATCAACTTGTCGTTCTAGATCAGCACGATGAGAATGGCAAGGTCCACATCATCCCTGTCACACTGTCGTTACCCGACTTGACCGACGCTAATGCTGAAGTCAATCTGGCGACTGCCTCTATCATGTACAATAACTGA
Protein Sequence: MSKPRDGKDYSEMENQLSTFLIIDNESYARQQLFKSNSLSPTKSQMMLKSKNASQITNLQDLKKVTPAVRLLGQKAESLNELRKNLQPDKKIAPRVRQEMQKYCRACAGLKVPLVNIFSDKGVQMRLNQQMKHLEDISQDSLTTQICMDCICDLKMSYKFFMQIKKAEVKLRTIHSSLVEVYDKEATESHNVIEHSYFGQNIKEEEEPELNEATFEDDSIEEFDPDDPPFQTSEAEEMHSELENGDKKSKVLGRLKHYEGLKSYITVPKEQTILDAKVQKVAAVPKVNSVMNDEMLLKTLESSVESNDDLSNDGLRQSTTVEQAKGSEEKVQKERTQKVSNVQGIPNLQNVISTTTKEDGIMYVTMKGSKPNELLLVKVKKMDKPVQDSKKIVMSEKTLNKTPIDIKPIGKFLSKYESLMKDKDLFSNKKSEEREQIIEEQIEEYKRKREKILGRTVSSSVESIRMKEDEMKMDLDTDSIDLAKELVEEDTKENAPFDGSFSDTIINEVRYNDKTWEEETKVVIEEEEVEEQTVMKEELLEEEKVEKDEDRLAKLIGETEYLQDFLEYLKSRRIVITRLKDDDIVQLYDGRYKKDPFDDSYNDKLTLDCDFCLRTFTSKEKLEDHVKCHDFKILHFCEDCGEEFSTNKARRNHNVICLKKLVCRYCNVVLESKGKKRQHEQKHCDNMYGQLCDICGEKFKHQGTLDQHIKTRHMDWEKIFQCPKCPKKFAFKTKLSFHLKSVHTSVRAYLCEDCGADFKNPASLRHHRIRKHQPIGNKRQCSVCSKMVPFYSLSKHMHTHKEYSIKCPYCDKMFKNTSTLKQHTRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSMLVIHRNRVHKDGRHYTCRICNRSMISARSLDWHLTHIHNEASTRAKEDSNASGSSESKRVSCYHCNKTFKTEMILRTHVKNTHTQKDPVKCLDCDQMFTSEVRLRHHMMVEHNRLEGTLQCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLKCRFCDWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGTGFKRNSKINHKRLKVEHEGETSASEQDETIIGQPITEVLATSEVDEGQYEEATIKFETQELTEYETYEQDFEETSQEASEAQEVIMNMDEDGHIYTEEVTADNIESTSSSEIISGDLMTNQLVVLDQHDENGKVHIIPVTLSLPDLTDANAEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01493790;
90% Identity: iTF_01493790;
80% Identity: -