Basic Information

Insect: Trissolcus brochymenae
Gene Symbol: -
Assembly: GCA_030523145.1
Location: JAQQRF010000859.1:19191-22491[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0004 0.045 14.7 4.1 1 23 221 243 221 243 0.97

2 11 1.2e-05 0.0014 19.5 1.5 1 23 249 271 249 271 0.98

3 11 0.0032 0.35 11.9 3.8 1 23 277 300 277 300 0.95

4 11 0.012 1.4 10.1 5.2 1 21 306 326 306 328 0.95

5 11 0.00012 0.014 16.3 1.9 1 23 334 356 334 356 0.99

6 11 2.7e-05 0.003 18.4 0.4 1 23 362 384 362 384 0.98

7 11 0.0015 0.16 13.0 1.0 1 23 392 415 392 415 0.97

8 11 0.00036 0.04 14.9 3.2 2 23 422 443 421 443 0.97

9 11 0.00012 0.014 16.3 0.3 1 23 449 471 449 471 0.99

10 11 4e-05 0.0045 17.9 3.1 1 23 477 500 477 500 0.96

11 11 1.4e-07 1.5e-05 25.6 1.2 1 23 514 536 514 536 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0004	0.045	14.7	4.1	1	23	221	243	221	243	0.97
2	11	1.2e-05	0.0014	19.5	1.5	1	23	249	271	249	271	0.98
3	11	0.0032	0.35	11.9	3.8	1	23	277	300	277	300	0.95
4	11	0.012	1.4	10.1	5.2	1	21	306	326	306	328	0.95
5	11	0.00012	0.014	16.3	1.9	1	23	334	356	334	356	0.99
6	11	2.7e-05	0.003	18.4	0.4	1	23	362	384	362	384	0.98
7	11	0.0015	0.16	13.0	1.0	1	23	392	415	392	415	0.97
8	11	0.00036	0.04	14.9	3.2	2	23	422	443	421	443	0.97
9	11	0.00012	0.014	16.3	0.3	1	23	449	471	449	471	0.99
10	11	4e-05	0.0045	17.9	3.1	1	23	477	500	477	500	0.96
11	11	1.4e-07	1.5e-05	25.6	1.2	1	23	514	536	514	536	0.98

Sequence Information

Coding Sequence: ATGGCAACCAATGTGTCTACTATAAAACTAGAAGCGGGCCAAGAGTCCGTGACGGAAATACAAACCTACCTAGAAACCTTCAACAAAGAAATTGAAGGCCAAGGAGAGCAGCTGCAACATGTCCAGCtgCAACAAGTTGAAGGCTTATCTGGTGGAGAAAACGGAGGGACATACTTCGTCGACCAATCTGGCCAGTATTACTACCAAGCTAACGGAGATGAAGCGCCTGTTATGACCCAAGTTCAAATCCAAGAAGTCGATGATGGCGTGGACGGTCAGGATGATGGCCACGATGAGAGATTCGATGATATGGAAGGTGTACAGGACGATGGATCTgATCACGTGGGAAGTGGAGATTCGAACCGTGTGGTGATTAATTCCGGCGAAGCGTACCAGACGGTAACAATTGTCCCATCGGATACAAATCCTGGAGAAGTCAGTTACGTTTTAATAGTGCAACAACCGGAGTCGGAGGAAAAGGAAGAGAGAGCAGAGGGCGAAGGTATCGAGGGCGAGGGAGAAGAAGGAGAACAAGACCTCACGGTTTACGACTTTGAGGATAACGAAGATAATGAAGTACCCGTGGAGTCCGAGGCTGAAGACGACAAAGCCAAAATCATCAAGATTTTTCCCAAAAAGTCGCAGACTGTGACGCAAGCCCATATGtgtaattattgtaattacaCGAGTCCTAAGCGGTACCTTCTGTCGCGTCACATGAAGTCTCACTCCGAAGAACGACCACATAAATGTAGCGTATGTGAACGAGGTTTTAAAACTCTGGCGTCTCTTCAGAATCATGTAAATACCCACACAGGAACAAAACCTCATCACTGCAAATTCTGTGAGAGTGCTTTTACCACATCTGGTGAACTTGTGAGGCATGTGAGATACAGACACACGCACGAAAAGCCTCATAAATGCCACGAGTGTGATTATGCTTCTGTGGAATTATCGAAATTGAAACGGCACATCAGGTGTCACACCGGAGAACGTCCCTATCAGTGTCCGCATTGTACGTATGCCAGTCCCGACACATTCAAATTGAAGCGTCACTTACGTATCCACACCGGAGAAAAACCTTATGAATGTGATGTGTGTCAAGCGCGGTTCACTCAGTCGAACAGTTTAAAAGCTCACAAATTAGTACACAATGTCGGTGATAAGCCAGTATTTCAATGTGAATTGTGCCCCGCAAAGTGCGGTAGAAAAACGGATCTAAGAATACATGTGCAAAAATTGCACACTTCAGACAAACCACTCAAGTGTAAACGATGTTCCAAATCTTTCCCAGATAGATATAGTTACAAGCTTCATAGCAAAACTCATGAAGGTGAAAAGTGTTACAAGTGTGATCTTTGTCCGTACGCGTCTATATCAGCAAGACACCTTGAAAGCCACATGCTAATTCACACCGACCAGAAACCGTATCAATGTGAGTTATGTTATCAGTCGTTCCGACAAAAGCAGCTGCTTAAGAGACATCGCAATCTTTATCATAATCCATCGTACGTACCACCGCCGCCGCAAGAGAAAACTCATCAGTGCCCCGAGTGTGAGAGACCTTTTAGGCATAAAGGCAACCTCATTCGTCACATGGCAGTTCACGATCCAGAATCATCTTTGCAAGAAAAGCAGCAAGCTCTGAAAATTGGCCgccaaaagaaaattcaaattattgatgGGCAACGAGTCGAGGTCATGACTGGTGATTTAGCTTCTAAACTTAAAGGTTATGACGATGACGAGGAAGAGGAAGAAGATGAAGATGCATTGGCTGTTCAAAGTGGCGATGGACAACAATATGTCGTATTAGAAGTTATTCATCTGGCGGATAGTCAGGAAAACGACCAGgAAATGTCTGCAGTAGTCAACGAAGATGGTGATTTAGTAATGCAAGATCCTTTGGACCAAGAAGGGACAATAATCACAAGCAATCCAGATGATGATGAACTGGATGATATGGATGATGATATGTCTGATGTGAAACTCGTATCCGTAACGGGCAAAGCAGCAAATGAATCAGAATTACGAAAGGAGATGGAAACTTGTTTCGGCTTTGATGAAGATGAAGAGGATGATGATAAGAACAACTCCGAAATGCATTTACTGCCGAACATTGCGTAA
Protein Sequence: MATNVSTIKLEAGQESVTEIQTYLETFNKEIEGQGEQLQHVQLQQVEGLSGGENGGTYFVDQSGQYYYQANGDEAPVMTQVQIQEVDDGVDGQDDGHDERFDDMEGVQDDGSDHVGSGDSNRVVINSGEAYQTVTIVPSDTNPGEVSYVLIVQQPESEEKEERAEGEGIEGEGEEGEQDLTVYDFEDNEDNEVPVESEAEDDKAKIIKIFPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKFCESAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDVCQARFTQSNSLKAHKLVHNVGDKPVFQCELCPAKCGRKTDLRIHVQKLHTSDKPLKCKRCSKSFPDRYSYKLHSKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCELCYQSFRQKQLLKRHRNLYHNPSYVPPPPQEKTHQCPECERPFRHKGNLIRHMAVHDPESSLQEKQQALKIGRQKKIQIIDGQRVEVMTGDLASKLKGYDDDEEEEEDEDALAVQSGDGQQYVVLEVIHLADSQENDQEMSAVVNEDGDLVMQDPLDQEGTIITSNPDDDELDDMDDDMSDVKLVSVTGKAANESELRKEMETCFGFDEDEEDDDKNNSEMHLLPNIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01493789;
90% Identity: iTF_01493789;
80% Identity: -