Tbro010022.1
Basic Information
- Insect
- Trissolcus brochymenae
- Gene Symbol
- -
- Assembly
- GCA_030523145.1
- Location
- JAQQRF010000473.1:62076-64987[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.026 2.9 9.0 0.4 3 21 8 27 6 28 0.85 2 14 0.54 60 4.9 0.0 2 20 34 52 33 54 0.90 3 14 0.59 66 4.8 0.3 1 12 223 234 223 243 0.89 4 14 0.84 93 4.3 1.8 1 19 354 372 354 372 0.97 5 14 0.0017 0.19 12.8 6.0 3 23 381 401 380 401 0.97 6 14 9.8e-05 0.011 16.7 4.3 1 23 411 433 411 433 0.98 7 14 0.015 1.7 9.8 0.3 1 23 452 473 452 473 0.89 8 14 0.00051 0.057 14.4 0.1 2 23 479 500 478 500 0.95 9 14 5.9e-05 0.0065 17.4 3.7 1 23 558 580 558 580 0.99 10 14 1.1e-06 0.00013 22.7 3.9 1 23 586 608 586 608 0.98 11 14 0.00017 0.019 15.9 4.6 1 23 614 636 614 636 0.97 12 14 6.8e-06 0.00075 20.3 0.8 1 23 642 664 642 664 0.98 13 14 0.00024 0.027 15.4 0.1 1 23 668 690 668 690 0.98 14 14 0.00014 0.015 16.2 0.1 1 23 698 720 698 720 0.97
Sequence Information
- Coding Sequence
- atGGGTTCGTGTAATCTTGTTTGTCCGATGTGCTGCGGCGAGACTTTTAACAGTTCGCAATCTTTGAAGTACCATTTGTTGAGCATGACGGATAATCTGTATTGCCCCGGATGTTCGAAACGCATCGACTCGGTTGTGGCTTTGATTCAGCACCTCGACCGCTGCGGACAGACCAACGAATCCGAAGAGGACATGGTTCAAAAAGACATTAAGAATGTCAACGTCCAGTCCATTAGTGTCGAGATGGATGAAGAAGTACTTTCGGAACAGttgaattcgaattttatACAGACCAATGAAGGACTTGTAATAGTTGGAGGTTCCAGGACAATAACCGTCGATGATAATGGAGAGATCAAATTGCTTGAAAAACTTGACTCGGAAGAGCAAGAGCCTGAAACGAGATCgttggaattgaaatttaccAAGGAATCGAAAAGCGTTGCGCCCGGGTCTGTTGTAAATGTGAAAATTCCTGTTACACTTGACAAGGATTCCGCTAAGAACGTGATCACAATTTTCCCCGACGAGATGCAGCAGGATGAAAGCAACGCAATGGAGACTGAAAACGCAGAAGAATCTGAGGAACTTGAAGCAAGAATTTTGAACGTCAAGGAAGAAATGTGTGACGAGGAAATTCAGACGGAAGTTTTCCTAAACACAAACTACAGCTGCAGCACTTGCAACATGAGTTTCCCGTCAGTTGCCGAGCACATCAAGCAGTACCACGATGGCCAGCAGGTGGTATTAGAGATGGACAGCGATCAGATCAACAATATGGAATTAAGTGCCTTGATAACCGGAGACAACGAGACCGAGAACGAAAGCGAGAATGTGACTTTTACTCGTCCCAGACACACTATGAACACTTTAAGAACTGAAGAATGCAAGGATAGCGAAGGCCGATTGTATACACGGAAGGTTGTTCAGATCGAAAAGTTCTGGGACAAAAATCCGCAGGCTgcacaatcaaataaatcttCCACCTTGTTGGAAAAGTTGTTTTCCAATGTCGAAGGCGTTAAGGTTGGCAGTGACAAACAAGTTTCCCTTCGAACCTACAAGTGTAACCAATGTTTCAATGAGTATGCAAAATTATCAGAATTTAAGAGCCATCCATGTGTGAACAGCGCCAACCATTGTGAACACTGTGATCAAACATTCACGACCCTCAAAGCGTTGCATGCCCACTACAAGCTCCACAAATTGGATGTAGCAGAGATGTCAAAGTTTGTCTGCAAACAATGTGGCACTCAATTTACAACCCACAAAAGTTTGAGGCTTCACTCTCGAATGCACGGTCCTGTTAGAACGAGACATGTCGACGCTCCAGAAGGAACTGGAGAATCCACCTTTACTTGCAAGGAATgcgGGAAAGTTTTGTCGGAATCGTACAAGTCTGCCCACATGGCCCTCCACTCCGGGGACTCAGTGACCTGCACAATCTGCAACCGCAAATTTGATTCCGCACAAAGCTTAGAGATGCACGCTGCCGTGCATACCGAAACGTTCATCGTTCAACGATCACCATCACCATCTGATGCTCTTATGACTGTCGGTAACTCGAATTCAGCGATGGAATCTGTTCAGACAAGTCGAAGTAACAGTCGGAGCACTGCTACTTCTGTCACCATGTCAACGATGGATGCTGCTGAGAATCCGCAGAAACCTTACCAGTGTCAACACTGCGGTCGGCGATTTGCTCGCCCGCACGAGAAAGTCAAGCATGAACGGATCCATACCGGAGAAAAGCCGCACGTTTGCGAGGTCTGTGGAAAAACTTTCCGAGTGTCATACTGTTTGACCCTGCACATGAGAACTCACACCGGCGTTCGTCCCTATGCCTGCAAGCACTGCGGCAAGCGATTCAAAGCGTCGTCGGTTTACAATCACCACTTGTTGACACACAGTGACGAGCGCGCCTACACCTGTCCCTTCTGTCCGAAAACTTTCAAGACCCGTGTGCAGCTTGCGGGTCACAAAAACTCTCACACCAAGCCGTTCCGGTGTACCGAGTGCTCGCGACCCTTCGCCTCGCTGTACGCAGCGCGTGCCCACATCGCGACCCACAAGAAGGACAACAATCTGAAATTCAGCTGTGACATCTGCGGTGCGTCTTACGGTCGAGCGTTCGCTCTGAAGGACCACCTGAAGCAGCACAGCGAAGAGATTTCATCCGCACCGGAACCGGCGCACGAGGAAGAAGTGCAGGAGACGTTTTTGGTCGCCGACGAGGAAGAGGTCGAGGAGGAGGAACTGGTGATTCCGTCGCCCCTGCCCGTGGCACAGTCGTCCGGTCCCGATGACTCCAATTAA
- Protein Sequence
- MGSCNLVCPMCCGETFNSSQSLKYHLLSMTDNLYCPGCSKRIDSVVALIQHLDRCGQTNESEEDMVQKDIKNVNVQSISVEMDEEVLSEQLNSNFIQTNEGLVIVGGSRTITVDDNGEIKLLEKLDSEEQEPETRSLELKFTKESKSVAPGSVVNVKIPVTLDKDSAKNVITIFPDEMQQDESNAMETENAEESEELEARILNVKEEMCDEEIQTEVFLNTNYSCSTCNMSFPSVAEHIKQYHDGQQVVLEMDSDQINNMELSALITGDNETENESENVTFTRPRHTMNTLRTEECKDSEGRLYTRKVVQIEKFWDKNPQAAQSNKSSTLLEKLFSNVEGVKVGSDKQVSLRTYKCNQCFNEYAKLSEFKSHPCVNSANHCEHCDQTFTTLKALHAHYKLHKLDVAEMSKFVCKQCGTQFTTHKSLRLHSRMHGPVRTRHVDAPEGTGESTFTCKECGKVLSESYKSAHMALHSGDSVTCTICNRKFDSAQSLEMHAAVHTETFIVQRSPSPSDALMTVGNSNSAMESVQTSRSNSRSTATSVTMSTMDAAENPQKPYQCQHCGRRFARPHEKVKHERIHTGEKPHVCEVCGKTFRVSYCLTLHMRTHTGVRPYACKHCGKRFKASSVYNHHLLTHSDERAYTCPFCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIATHKKDNNLKFSCDICGASYGRAFALKDHLKQHSEEISSAPEPAHEEEVQETFLVADEEEVEEEELVIPSPLPVAQSSGPDDSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493787;
- 90% Identity
- iTF_01493787;
- 80% Identity
- -