Basic Information

Insect: Trissolcus brochymenae
Gene Symbol: -
Assembly: GCA_030523145.1
Location: JAQQRF010000498.1:31093-33259[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0025 0.27 12.3 0.2 1 23 125 147 125 147 0.98

2 10 7.5e-07 8.3e-05 23.3 2.3 1 23 358 380 358 380 0.99

3 10 5.3e-06 0.00059 20.7 2.8 1 23 386 408 386 408 0.98

4 10 6.4e-06 0.00072 20.4 1.8 1 23 414 436 414 436 0.97

5 10 6.7e-05 0.0074 17.2 0.7 1 23 448 470 448 470 0.98

6 10 3.5e-06 0.00039 21.2 4.8 2 23 477 498 476 498 0.96

7 10 0.00018 0.02 15.8 7.4 1 23 504 526 504 526 0.98

8 10 5.9e-06 0.00066 20.5 6.5 1 23 532 554 532 554 0.97

9 10 2.8e-06 0.00032 21.5 6.5 1 23 560 582 560 582 0.97

10 10 4.1e-05 0.0045 17.9 5.2 1 23 588 610 588 610 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0025	0.27	12.3	0.2	1	23	125	147	125	147	0.98
2	10	7.5e-07	8.3e-05	23.3	2.3	1	23	358	380	358	380	0.99
3	10	5.3e-06	0.00059	20.7	2.8	1	23	386	408	386	408	0.98
4	10	6.4e-06	0.00072	20.4	1.8	1	23	414	436	414	436	0.97
5	10	6.7e-05	0.0074	17.2	0.7	1	23	448	470	448	470	0.98
6	10	3.5e-06	0.00039	21.2	4.8	2	23	477	498	476	498	0.96
7	10	0.00018	0.02	15.8	7.4	1	23	504	526	504	526	0.98
8	10	5.9e-06	0.00066	20.5	6.5	1	23	532	554	532	554	0.97
9	10	2.8e-06	0.00032	21.5	6.5	1	23	560	582	560	582	0.97
10	10	4.1e-05	0.0045	17.9	5.2	1	23	588	610	588	610	0.98

Sequence Information

Coding Sequence: atgttcattgtCACGAAACAAATTGACAGTACAAATATCAGTCGACTCTGTCGGACTTGTTTGCAAGAAGATTGTGACAAAATGGTCTATCTTTTCGTCGGTCCAGCAGGATCATCACTCGCCGCAAAATTGCGTTCACTATCCTGTCTCGATgtCTGCCAAGGAGACGGTTTACCTGAAAGAATGTGTGATCGTTGTGTTACAAGAACAGAGTCGGCACTTTTGTATAGAGAACAATGCAGAGCTGCAGATCGAGCTTTGAGACAAGCAGCAATGAAGgtagCTGGTGTCACACCCTACACGACAGCTGCTGgttgcaaattatttcaagagAACCAGGCATTTGTACCAACTCAAAACAACCAGAACACATTCAAATGCGTGGAATGTGGAGCACTATTCATAAACTATCAAGAATTGTTGGCTCACAAGAAGCTCCATCTGCCGTTCTACGAGGACAGCAACATCCCTCTACACGTTTTTGAATCACACATGGGGTATTCGAATTTGTCACACCAAAACTATGGCATGAATTACAGCATGAATGTAAACAACGTGCAACAAAACCAGTCGTCGGTCATTATATCCAATATGTCGAATCCCATGCAAATGAACGACAGAAGCGGCCAGTTGGACTATCCTCTGATCGACTATTCTTTACCGAATAAAATTCCAAATACAAATCACAGTTACACGCCGAGTAGTGAAAACATTGATGTATCCGGCGACGAGGAACACATTGAAATAAGCGACTCCAATATATTTACCCGTCACGATGACCAAACGTGCGAAAATTTAATCCAGGATTTATCTTATTCAAGGACAAACGTCAATGATTACGAAGTCATTCAGAATCTGCATTATTCTCATAATACCGAGATAGATATTCATGAAACCACCAAGTCGATGAACCATCAGATGCAAAATCAgatgcaaaatcaaattttaagtAAAATCAGCGTTGATGAAATTGATGAGGTCCAAAATCAGATGTTGCCGAAACCTGATAGCAGTGATGGTAAAATTAATGAGATGCAAGATCCAATTCTACCTAAGgttgttgagaaaaaattcaaatgcgAGGAgtgctcgaagagtttttcaCAAAAGTCGAGATTGAGATCGCACGTTCTGACTCACAGTAATTTGAAACCTTTCCAGTGTAATCACTGTAATAAGGCTTACACTTTGAAGAGTAAATTAAACGCTCACGTGCGCCTTCACACGAAGCGAAACGTCCACACATGCAGAATTTGCGACAAGGAGTTCTCGTATCCTTCGTATCTAAAAGAACACGAGAAAGTGCACGAATTAAAATCCGGCCCCGaaccaatcaaaaattttgaatgcacaGTCTGTCAAAAGAAGTTTCAGGTGGAAAAGAATTTGATCCTCCACCTGAGGCTGCATAGTGACACAGACGTTCTAAGCTGCGAGTtctgtgacaaaaaatttagcCGCAAGTACCACCTGAAGATGCATCTGAAGATGCACCAAGCTGCCAAAACGCACAAGTGCGActattgtgaaaaatgttttacccTTAAGTGCAATTTAGTCGAACACTTGAGGAtccatacaaaaatgaaacccTTCCGATGCGAAACTTGTGGCAAATGTTTTGCACAATCCAGTCATCTAAAAAGTCACAAAACTTCACACGATAATACGCGTTTGCACCAGTGCAAGATTTGTGGAAAACGGTTCAAACTGTCGAGTCACCTGAAACGGCACACTAACTTACATACGGGTGGTAAAGTTTACAAGTGCAACGAGTGCGGCCAATTGTTCTCCCATTCGTTCAGTTTAAAGAGACATTCCAAAAAACACACCGAGTCCTATTAA
Protein Sequence: MFIVTKQIDSTNISRLCRTCLQEDCDKMVYLFVGPAGSSLAAKLRSLSCLDVCQGDGLPERMCDRCVTRTESALLYREQCRAADRALRQAAMKVAGVTPYTTAAGCKLFQENQAFVPTQNNQNTFKCVECGALFINYQELLAHKKLHLPFYEDSNIPLHVFESHMGYSNLSHQNYGMNYSMNVNNVQQNQSSVIISNMSNPMQMNDRSGQLDYPLIDYSLPNKIPNTNHSYTPSSENIDVSGDEEHIEISDSNIFTRHDDQTCENLIQDLSYSRTNVNDYEVIQNLHYSHNTEIDIHETTKSMNHQMQNQMQNQILSKISVDEIDEVQNQMLPKPDSSDGKINEMQDPILPKVVEKKFKCEECSKSFSQKSRLRSHVLTHSNLKPFQCNHCNKAYTLKSKLNAHVRLHTKRNVHTCRICDKEFSYPSYLKEHEKVHELKSGPEPIKNFECTVCQKKFQVEKNLILHLRLHSDTDVLSCEFCDKKFSRKYHLKMHLKMHQAAKTHKCDYCEKCFTLKCNLVEHLRIHTKMKPFRCETCGKCFAQSSHLKSHKTSHDNTRLHQCKICGKRFKLSSHLKRHTNLHTGGKVYKCNECGQLFSHSFSLKRHSKKHTESY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01493792;
90% Identity: iTF_01493792;
80% Identity: -