Tbro009296.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trissolcus brochymenae
Gene Symbol
-
Assembly
GCA_030523145.1
Location
JAQQRF010000419.1:43889-46658[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00014 0.016 16.2 0.9 2 23 38 59 37 59 0.96
2 16 0.0016 0.18 12.8 0.4 2 23 129 151 128 151 0.96
3 16 0.00019 0.021 15.8 1.5 1 23 157 179 157 179 0.96
4 16 0.45 50 5.1 0.4 2 23 184 206 183 206 0.93
5 16 0.0004 0.044 14.8 1.2 2 23 212 233 211 233 0.97
6 16 5.8e-07 6.5e-05 23.7 0.4 1 23 239 261 239 261 0.97
7 16 0.00098 0.11 13.5 0.5 1 23 267 289 267 289 0.95
8 16 0.0029 0.32 12.0 0.2 2 23 469 491 468 491 0.91
9 16 0.043 4.8 8.3 2.9 1 23 503 526 503 526 0.97
10 16 0.12 14 6.9 3.7 1 23 539 562 539 562 0.93
11 16 0.00098 0.11 13.5 6.6 1 23 568 590 568 591 0.95
12 16 0.13 14 6.9 0.3 3 23 598 619 596 619 0.94
13 16 0.00067 0.075 14.0 0.2 1 23 624 647 624 647 0.95
14 16 3e-07 3.3e-05 24.6 0.4 2 23 654 675 653 675 0.96
15 16 0.00023 0.025 15.5 6.3 1 23 681 703 681 703 0.95
16 16 6.8e-05 0.0076 17.2 0.6 1 23 709 731 709 731 0.97

Sequence Information

Coding Sequence
ATGGAAGCAAACTCAGCGccgaaatttcatttcgtcaATGTCGAGatgaaaaagtcaaaaaagaaaccaaaaccCTCGCCTATCGAAGTACATAACACAATTTCCATCTGGCGTTGTGATATCTGTAAGAAACTTTTCAAGTCGGCTTACTATTTGAATGTTCACAAGAACAATCACGAGGAGGAAAGTGAAGAGTCACCGATTGCGGAGGGTGAAATGCCAAATGTGGAACCGAACCAGGAAAAGAGCTTGCCGGAAACTCACAAAAAGGttgatcaaaataatgaagagGTTGAAACTAAAGTACGAATAGAAAGACTGATAGTTGATAAGGACCTGTCGATGGTCTCAAGCAACGAGACAAATCTGACTCTGCCGATGATCCAGTGCAGGATTTGCGACACCAAGTACGCGAAACTCGACGCTATGAATCGACATTATAAAAGGGCACACCCAGACGTGACGAGTTTCAGCTGCAATCATTGCaaggaaattttcaaaacctaTGGCGCTCTGCAGAGCCACGAGAATGGCCATGAAAATCCGCTCATGTGTGAAGTCTGCGGCAAATTATACCTCAATATCTACAGGTTGTACGAACACCAGCGTAAATTTCATTCTACGACGGATCTCAGGTGTAAGGACTGTAGGAGGGTATTCCTGACTaaggaaaattttgaagacCACATGGAGCGCCACAGGACCTGGGAGCCTTTTGTATGCGACGTCTGCGGCAAGGTTTTCAAACAGAAGAAAGATATCAGAAAACATATGGTGGTTCACACGGACTCAATGCCTTACATTTGCAAAATCTGCAACCGAAGCTTCAGGACCATGAACAGCGTCGGCCAGCACCTTCTTTTGCACACTGGCAAGATGCTTTATACGTCCTCAGATGAGAGGGATAGTgggatatttatatttgacgAAGAGTCCATAACCATGCGCAAGTGGCAGATCCTTGAATTTGACGGCAAGCCATATTATGCTTTTGTACCTGAAAACGTGACACCTCTGGATGAAAACATCCTGTCAGAATCGGAAGAACAGATCGAACCCGACATCAAACTGGAAAAATTGACTTCTGACCAGAAGGTGAATAAATTCAAGGAAGATTCATTTGACAGTTTTCCTATCGACGAGAATACTTACGAGGAGTTTGAGGAGATGGTtgaggaagaagaagaggagGAGGGCGAGGATGAAGAGAGAATTGCAACAGTGAAAACAACCAGGAGCAGAGCAAAGGCCAATCCTGAGCAGATCAAAGTGGAGGAGATGACCCTCGACTTGGACGATGATGAGGTGGATGATTCCATCGGCTACCTAATCGAAAATTTTGAGGACGAGTCCTCGCAAAAAACAGCAGGTGCATCCTCAGAGACTGAGGTCTCCTGCACTCTAAAATGCAAGGTCTGTTCGGAAACGTTCCCCTCAAATCTTCTCTTCAGGAAACACGTTGCATGGATTCACAAGAAAAAGGTTTATCTTAAAGAAGAGAACGCCTACGTTTGTTGTGTCTGCGACTATCAAACGACGAAGAAAAATCTGTTCGCCGTCCACTTGCAACGCAAACACAAAAATCTCACCACCAGGAAGCAGACCGGAAACGTCTTTCCCTGCGCCGCCTGCGGGTTTGAGTGTCGTTCCAAACACTCGTTACAGTCACACTTCATCCGAAAACATACTGATCGCTATGAACACCAGTGTAAATTTTGTACCAAACAGTTTAAGGTCAAGGGCGACCTGACGAACCATGTGAGGTTCCATCACAAGGAGAAGCCGATCAACTGCGATGTCTGCGGCAAGCTTTGCCTGAACAGTGGGTCTCTCTATGTGCATCAAAAGTGGGCCCACTATAAGCCCAAGTTCGAATGCCCGATCTGCAAGAGACGCATGGTCACACAGGAGAATCTTGACCAGCACATGGTATCACAGCACGAGAAGAGGGAGAAGATCGTCTGCGCGGAATGCGGCAAGACTTTCTCGAAGAAGGACTCGTTCAAACGACACATGGCGGTTCACACGGGAAGCAAACCGCACTGTTGCGTGATCTGTCAAAAACACTTTGCCAGACGTTCGCAGCTTAGACAGCACCTTCTGATTCACACGGGGAAAAAGCCTTTCGTTTGCGATATTTGCGGGAAGGCCTTCACTCAGAAACCTGGACTCATTTGTCACAGAAAAATTCATCCCGGTCCGCATCCACCGTTGCCCGTTATGCCCATCGGTGATATCGTAAAAGAGTTTACAGAAGGATATTATGTGGATCCGTTCAATCAGGACGCGGAAGCAGAAGCGGATTCAGAATAA
Protein Sequence
MEANSAPKFHFVNVEMKKSKKKPKPSPIEVHNTISIWRCDICKKLFKSAYYLNVHKNNHEEESEESPIAEGEMPNVEPNQEKSLPETHKKVDQNNEEVETKVRIERLIVDKDLSMVSSNETNLTLPMIQCRICDTKYAKLDAMNRHYKRAHPDVTSFSCNHCKEIFKTYGALQSHENGHENPLMCEVCGKLYLNIYRLYEHQRKFHSTTDLRCKDCRRVFLTKENFEDHMERHRTWEPFVCDVCGKVFKQKKDIRKHMVVHTDSMPYICKICNRSFRTMNSVGQHLLLHTGKMLYTSSDERDSGIFIFDEESITMRKWQILEFDGKPYYAFVPENVTPLDENILSESEEQIEPDIKLEKLTSDQKVNKFKEDSFDSFPIDENTYEEFEEMVEEEEEEEGEDEERIATVKTTRSRAKANPEQIKVEEMTLDLDDDEVDDSIGYLIENFEDESSQKTAGASSETEVSCTLKCKVCSETFPSNLLFRKHVAWIHKKKVYLKEENAYVCCVCDYQTTKKNLFAVHLQRKHKNLTTRKQTGNVFPCAACGFECRSKHSLQSHFIRKHTDRYEHQCKFCTKQFKVKGDLTNHVRFHHKEKPINCDVCGKLCLNSGSLYVHQKWAHYKPKFECPICKRRMVTQENLDQHMVSQHEKREKIVCAECGKTFSKKDSFKRHMAVHTGSKPHCCVICQKHFARRSQLRQHLLIHTGKKPFVCDICGKAFTQKPGLICHRKIHPGPHPPLPVMPIGDIVKEFTEGYYVDPFNQDAEAEADSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-