Tbro006396.1
Basic Information
- Insect
- Trissolcus brochymenae
- Gene Symbol
- -
- Assembly
- GCA_030523145.1
- Location
- JAQQRF010000231.1:21062-22387[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.3e-05 0.0048 17.8 2.6 1 23 7 29 7 29 0.96 2 14 1.9e-06 0.00022 22.0 3.4 1 23 62 85 62 85 0.93 3 14 1.4e-07 1.6e-05 25.6 2.5 1 23 92 114 92 114 0.99 4 14 8.7e-07 9.7e-05 23.1 1.0 1 23 120 143 120 143 0.96 5 14 0.058 6.4 7.9 10.9 1 23 150 172 150 172 0.99 6 14 5.7e-08 6.4e-06 26.8 0.9 1 23 178 200 178 200 0.98 7 14 0.00058 0.065 14.2 0.8 2 23 207 228 206 228 0.97 8 14 2.9 3.2e+02 2.6 2.9 3 23 236 257 234 257 0.95 9 14 8.3e-06 0.00092 20.0 6.1 1 23 264 286 264 286 0.99 10 14 0.029 3.2 8.9 4.6 5 23 296 314 294 314 0.95 11 14 8.5e-06 0.00095 20.0 0.6 1 23 320 342 320 342 0.96 12 14 7.7e-06 0.00086 20.1 0.2 1 23 347 370 347 370 0.98 13 14 0.12 13 7.0 0.2 3 21 374 392 372 393 0.91 14 14 0.69 77 4.5 0.2 2 16 417 431 416 437 0.74
Sequence Information
- Coding Sequence
- ATGGTCATCAAAGAAACATTCGACTGCAACCTATGCGGAAAGAGTTACAAGCAAAAGTTTTCCTACTACCGTCACCTGGAGAACCACCGGAAGCCACAGGATCTGTTCGAACGCGAgaatgaattcaaacaaaattatcaactggATTCGCATCTCGAACTCCAGCGCCCGGACAAGTACCAGTTTGCTTGCACCCACTGTGACAAAAAGTACACCCGCCAATCAACGCTGACCAAACACATCTCGGACCAACACACGTTCCGGAAGTTTCGTTACAAGTGTAACTACTGTGACAAAAAGTTCCGCTACCCTAACACGCTCAACGACCACGTACGGACTCACACCAAGGAGGAACCTTTCGACTGTCCACGTTGCGACAGAAAGTTCAAAACCAGGTCCCAGCTCAGAATCCACGTGAAGATCGATCACCTAAAGTCCCCTGCGAAATACCAGTGTTGTTATTGTGACAAGCAGTTTCACATGAAGTGTCACTGGGTGGAGCACCTCCGAACGCACACCGGCGAGAAGCCCTACAGCTGCGAGTTCTGCGACAAGAGCTTCAGCCAGAACTCAGGCCTTCAGAAGCACATCGCGCGTCATACCGGCGAGGGCCTGCTGAAATGCGACAGCTGCAACAAGTACTTCGCCGACGGTTGGAACTTTCGGGAGCACCAAAAGTCACACAACAGGGAGAAACCGTACGGCTGCTCCGATTGCAACGTGTTCTATTCCTGCAAGACTGCTTACTTCTATCATGTGAGAAAATTTCACAACAGCGAAAGACCTGTGTACCAGTGcgattattgtaaaaaacattttttcacgaaATCAAGTCTGAGGGAGCATGTGAAACGACACATGGAAAAGGGCTCTTTGGGCTGCATCTACTGTGGCAAacacttttttaactttcagtGTCTGAAGGCGCACATCCTGCGTCACGTGGAGCCAAAGAGGTACCTGTGTCAACGTTGCGGGCTGACGTTCTCCAGTGTATCCACTTTGAATCGACACCAACTGGTGCATGTCAACAGGCCCTTCGAGTGTCAGATGTGTCCCAGGAAGTTTGAACGTGAGGTCGATCTGGAGGTGCATCTCAAGACCATTCATGTTGTACATTGTTTGTATTGCTCGGCTGTTTTTGCCTCTGAGAGAGAATTGCTGGAACATTTCAAGAGATATTTCAGGGGGTTTGGGATGGACGAGGGTAAGTTCTTCCCGCAGCTGGGAATAAAGAGCAAACCCCAAGAGTGCAATCGTTGTGGGAGAAAATTTTTGAGCGATTCAACTTATCTTGAGCACGCGACTCGGTGTTTTgacgaataa
- Protein Sequence
- MVIKETFDCNLCGKSYKQKFSYYRHLENHRKPQDLFERENEFKQNYQLDSHLELQRPDKYQFACTHCDKKYTRQSTLTKHISDQHTFRKFRYKCNYCDKKFRYPNTLNDHVRTHTKEEPFDCPRCDRKFKTRSQLRIHVKIDHLKSPAKYQCCYCDKQFHMKCHWVEHLRTHTGEKPYSCEFCDKSFSQNSGLQKHIARHTGEGLLKCDSCNKYFADGWNFREHQKSHNREKPYGCSDCNVFYSCKTAYFYHVRKFHNSERPVYQCDYCKKHFFTKSSLREHVKRHMEKGSLGCIYCGKHFFNFQCLKAHILRHVEPKRYLCQRCGLTFSSVSTLNRHQLVHVNRPFECQMCPRKFEREVDLEVHLKTIHVVHCLYCSAVFASERELLEHFKRYFRGFGMDEGKFFPQLGIKSKPQECNRCGRKFLSDSTYLEHATRCFDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493771;
- 90% Identity
- iTF_01493771;
- 80% Identity
- -