Tbro016836.1
Basic Information
- Insect
- Trissolcus brochymenae
- Gene Symbol
- Ir25a
- Assembly
- GCA_030523145.1
- Location
- JAQQRF010002232.1:1-6926[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0002 0.022 15.7 1.7 1 23 569 591 569 591 0.93 2 16 0.0026 0.28 12.2 0.6 1 23 597 619 597 619 0.96 3 16 0.00028 0.031 15.2 1.0 1 23 625 647 625 647 0.96 4 16 0.0093 1 10.4 4.2 1 23 653 675 653 675 0.95 5 16 2.2e-05 0.0025 18.7 1.3 2 23 681 702 681 702 0.98 6 16 1.7e-07 1.9e-05 25.4 2.5 1 23 708 730 708 730 0.98 7 16 0.00016 0.017 16.0 0.3 1 23 736 758 736 758 0.98 8 16 7.5e-06 0.00083 20.2 5.6 1 23 764 786 764 786 0.98 9 16 8.1e-06 0.0009 20.1 2.5 1 22 792 813 792 813 0.96 10 16 0.0012 0.14 13.2 2.1 1 23 822 844 822 844 0.96 11 16 7.5e-06 0.00083 20.2 1.1 2 23 851 872 850 872 0.97 12 16 2.8e-05 0.0031 18.4 1.1 1 21 877 897 877 898 0.94 13 16 0.017 1.9 9.6 4.0 1 23 949 971 949 971 0.98 14 16 4.7e-05 0.0052 17.7 0.5 1 23 977 999 977 999 0.98 15 16 0.019 2.1 9.5 5.1 1 23 1090 1112 1090 1112 0.98 16 16 2.8e-07 3.1e-05 24.7 0.3 1 23 1118 1140 1118 1140 0.98
Sequence Information
- Coding Sequence
- TCGCCCgttgatgaacaaaatgacGAAAGTGTCCCTAGCACAAGTCCGTCAAAGAAGCCTGACGAAACTCATGCGGACCAAACATCGCCTGATTCTAAACGTAGAGATGAAAGTGTCGCTAGCACGAGTGAATCAAGTGACCCTGAGAGACTTCAAATAGTTCTGTCATCGCCCGTTGATCAACAAAGCGATGAAAGTGTCCCTAGCACGAGTCCGTCAAAGAAGTCTGACGAAACTCATACAGACCAAACATCACCTGATTGTACAAGTAGCGATGAAAGTGTCTCTGGCACGAGTGAATCAAGTGACTCTTCGAAACAACGCACAGATCTGGCATCGTCCGAACCTggtaataaaatgaacaacacATTCTTAATGCCACACTATCGTATTGTAGTCTCTATAGTCGCTCCTTATGTGATGCGAGACAAAAAAACCGCAACTTTCTTTGGATACTGTATAGATCTTCTCCTCGAGATGCAAAAAGCTATGAATTTCACATACGAGCTATACGAAGTTACAGATGGACAAATCGGAGTGGTTGATGCCAACGGAAGCTGGAATGGGATGGTCAGAGATGTGATGGATGAGAAGGCCGATATTGGTCTATCTCTAATTTATCACATAGCCGACAGAGAAACAGCTGTAGACTTCACACTCCCAATAGATGATTTCATAGGATTTAGAATTATGATGGGTAAACCAAAGGAACTGCGAAACTTTTTTGAGTTCGTAACAATTTTGGATTACAAAATTTGGCTATGCATCATGGCGTCGTATTTCAGTACATGTTTGTTCCTCTGGGTGTTTGATAAGTGGTCGCCGTTCAGTTACCGAAACACTCGTTGCAACAATGACATGAACGAGAAAATCTTCACGTTCAAGGAGTGTCTCTGGTTTTGTCTGATGTGTTTGACTCCGCAGGGATGTGGACAAGTGCCACGAAACTTGTCCAGTAAACTAATCACAGCCACTTGGTGGGTGTTtgtatatatcattttatctACCTACAACGCTAATCTGGCAGTCTTTCTAACCGAATCTGGTACGGAGGTGACTATTTCTTCACTCGATGATCttattaatcaacaaaaaattcaatacgGTGTCATTGCTAATTCCGCCTCCTATCaccattttgaaaatttggcaCGCATTGAGGACAAGTTTTACAACATCTGGGTGGAGATGACTCTCAGCGACTCAATTTCATCTTCTGAGCGTATGCAATATGCCGTTTGGGATTatccatataaaaataagtacaCAACTATGGTTGAAACCATGAAATCGTATGGACTTCCCTCTGATTTGGACGAAGCACTTGACAGAATCCGCAATTCAAACATTCCATATGCACTAATAGACGCTGCTGCAAGAGTCAAATACTTAACGTTATCAAATTGTGATTATGTAATGATCGGGAACGAATTTAACATGAGACCTGTATCGTTGATAGTTCAAAAAGGATCAACGCTTACGAAAGAGCTGAATCATGTAATTCATAAATTGTCGTTGCGCGGAGAACTTCAAAGGTTACACAAAAAATGGTGGGACAACATTACGATAGAATGCGaagagaaaaactttttgcttGATCCTATTGATTTCCATACTATAGGAGGCGCTTttagtttgattttcattggAGTCATGTTAGGTTACTTTGGaatatttatagaatttttgtttcGCAGAGGAATCTACAAGTGTTATAATTGCGGTAAAACATTTCCCAGTCAAAGTCAGTTGATCTGTCACGAAATAGTTCACAAACTTAAAAGGAAGCATCAATGTAAGGTGTGTAACATCAGATTGTCAACGGTAGGTTCACTGAAACGGCACGAGGCAATTCATACCGGTGTAAAACAGTACCTTTGTCGATTTTGCGGTAAAAAGTTCATTGAGAAATCTACCTTAGACATCCACGAGAGAACTCACACCGGTGAGAAACCTTACCTATGCAGAAAGTGCTGCAAACAATTCAACACAGCAAACTTGCTGAATCGGCATATGAAGATTCACACAGAAGAAAAACGGAAATGCGAAGAGTGTAACAGAACATTCATCAGCTGGAATTTGTTCAAACGGCACAGAATGATTCACACGGGTGAGAAACCGTTCCCCTGTCAAACTTGCGATAAAACATTCGTTACCAAAGGCTCATTAAAACACCATATGAGAATTCACACCGGTGAGAAACCACACAAATGTGATGTCTGCGGAGAAGGATTCATGTATGCACCCTCACTGAAACTGCATATGGAAAAGCACACAGGTCTGAAACCACACCGTTGTGAAACTTGCAGTAAAACTTTTTCTACCAAAGATCGTTTGAAAACTCATATGAGAAGCCACACAGGTGAACGTCCATACAAGTGTCCGCATTGTAATAAAAGCTACAGTCTCAAACAATCTTTAAATAAACATCTTAGAAGTCAAACCACCTTAGATCATAGACCGCACATTTGTCTACATTGCGGTGAACGTTTTGCTAtcgaaaatgatttaaaaaaacatctaaCAACTCACATCGATAAAGAACCAAAAGAATGTGAACAGTGTGGCAAAAAATACATAGGCCAATATTCGTTGAAACAGCACCAGAGAACTCACAAAAAAGATGCGCACTATTGTCAACGTTGTGATAAAAGCTTTGCCACCAAAGAGGACTTAGAGAAACATGTGAAATCATGTAAAGATATACCTACAAGACCTAGTGTAATCACTCACACTAAATTTTACAAAGATCAGACATGGGAAGTTAGTCAACGTAGCGATGAAAGTGTTCCTAGCACAAGTCAACATAAGAAGTCTTTGGAAACTCACGCTGGTAAAAAACTACACGAATGTAGATTCTGcagtaaaaaattcaacagcTTAAGTATATTGCAACAGCACGAAAGGACTCACACAGGTGCGAAACCCTACGTTTGTCAATTTTGTAGGAAAGGGTACGCTTCAAAAGGTGGTTTAACCCAACACATGAAAATTCACAAAGACCAGACATCGGACGTTAGTCAACGTAGCGATGAAAGTGTTCCTAGCACAAGTCAATTGAAGAAGCCTGAGGAAACGCACACGGATCAGATATCGGACGTTAGTCAACGTACCGATGAAGGTGTTCCTAGCAGCACAAGTCAATTGAACAAGCCAGAGGAAAGGCGCACAGATCAGACATCTGACGTTCGTCAACGTATCGATGAAAGTGTTCCTAGCACAAGTCAACAGAAGAAGCCTTTGGAAACTCACGCCGGTAAAAAACTACACAAATGTAGATTCTGcagtaaaaaattcaacagcTTAAGTATATTGCAACAGCACGAAAGGACTCACAAAGGTGGGAAAACCTACATTTGTCAACTTTGCGGTGAAGCGTTCTCTTCAAAGGATGGTTTAACCCAACACATGAAAACTCACTCAGATCAGACATCGGACGTTAGTCAACGTAGCGATAAAAGTGTTCCTAGCACAAGTCAATTGAAGAAGCCTGAGGAAACGCACACGGATCAGATATCGGACGTTAGTCAACGTACCGATGAAGGTGTTCCTAGCAATTGA
- Protein Sequence
- SPVDEQNDESVPSTSPSKKPDETHADQTSPDSKRRDESVASTSESSDPERLQIVLSSPVDQQSDESVPSTSPSKKSDETHTDQTSPDCTSSDESVSGTSESSDSSKQRTDLASSEPGNKMNNTFLMPHYRIVVSIVAPYVMRDKKTATFFGYCIDLLLEMQKAMNFTYELYEVTDGQIGVVDANGSWNGMVRDVMDEKADIGLSLIYHIADRETAVDFTLPIDDFIGFRIMMGKPKELRNFFEFVTILDYKIWLCIMASYFSTCLFLWVFDKWSPFSYRNTRCNNDMNEKIFTFKECLWFCLMCLTPQGCGQVPRNLSSKLITATWWVFVYIILSTYNANLAVFLTESGTEVTISSLDDLINQQKIQYGVIANSASYHHFENLARIEDKFYNIWVEMTLSDSISSSERMQYAVWDYPYKNKYTTMVETMKSYGLPSDLDEALDRIRNSNIPYALIDAAARVKYLTLSNCDYVMIGNEFNMRPVSLIVQKGSTLTKELNHVIHKLSLRGELQRLHKKWWDNITIECEEKNFLLDPIDFHTIGGAFSLIFIGVMLGYFGIFIEFLFRRGIYKCYNCGKTFPSQSQLICHEIVHKLKRKHQCKVCNIRLSTVGSLKRHEAIHTGVKQYLCRFCGKKFIEKSTLDIHERTHTGEKPYLCRKCCKQFNTANLLNRHMKIHTEEKRKCEECNRTFISWNLFKRHRMIHTGEKPFPCQTCDKTFVTKGSLKHHMRIHTGEKPHKCDVCGEGFMYAPSLKLHMEKHTGLKPHRCETCSKTFSTKDRLKTHMRSHTGERPYKCPHCNKSYSLKQSLNKHLRSQTTLDHRPHICLHCGERFAIENDLKKHLTTHIDKEPKECEQCGKKYIGQYSLKQHQRTHKKDAHYCQRCDKSFATKEDLEKHVKSCKDIPTRPSVITHTKFYKDQTWEVSQRSDESVPSTSQHKKSLETHAGKKLHECRFCSKKFNSLSILQQHERTHTGAKPYVCQFCRKGYASKGGLTQHMKIHKDQTSDVSQRSDESVPSTSQLKKPEETHTDQISDVSQRTDEGVPSSTSQLNKPEERRTDQTSDVRQRIDESVPSTSQQKKPLETHAGKKLHKCRFCSKKFNSLSILQQHERTHKGGKTYICQLCGEAFSSKDGLTQHMKTHSDQTSDVSQRSDKSVPSTSQLKKPEETHTDQISDVSQRTDEGVPSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -