Tbro000389.1
Basic Information
- Insect
- Trissolcus brochymenae
- Gene Symbol
- -
- Assembly
- GCA_030523145.1
- Location
- JAQQRF010000008.1:118232-124109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0036 0.4 11.8 0.2 2 23 24 45 23 45 0.95 2 29 0.0012 0.13 13.3 1.8 1 23 51 73 51 73 0.98 3 29 0.0013 0.14 13.1 0.1 2 23 79 101 79 101 0.95 4 29 0.0011 0.12 13.3 0.6 1 23 107 130 107 130 0.95 5 29 0.00094 0.1 13.6 0.2 1 23 135 158 135 158 0.96 6 29 0.0021 0.24 12.4 1.8 1 23 164 187 164 187 0.96 7 29 0.00024 0.027 15.4 0.0 1 23 192 215 192 215 0.96 8 29 0.0025 0.27 12.3 3.0 1 23 248 271 248 271 0.91 9 29 0.0027 0.3 12.1 0.1 3 23 278 298 276 298 0.94 10 29 1.5e-05 0.0017 19.2 1.6 1 23 304 326 304 326 0.97 11 29 0.00019 0.021 15.8 1.3 1 23 331 353 331 353 0.94 12 29 0.00073 0.081 13.9 0.8 2 23 360 382 359 382 0.91 13 29 0.00061 0.067 14.2 3.4 1 23 388 410 388 410 0.98 14 29 0.035 3.8 8.6 0.4 1 23 414 436 414 436 0.96 15 29 0.00076 0.085 13.9 3.1 2 23 449 470 448 470 0.97 16 29 1.5e-06 0.00017 22.4 1.3 1 23 476 498 476 498 0.97 17 29 8.4 9.4e+02 1.1 1.9 3 23 506 527 504 527 0.90 18 29 0.0058 0.65 11.1 0.8 1 23 554 576 554 576 0.98 19 29 0.0044 0.49 11.5 0.5 1 23 578 601 578 601 0.98 20 29 5.1e-05 0.0056 17.6 6.6 1 23 607 629 607 629 0.98 21 29 0.0028 0.31 12.1 2.4 1 23 673 696 673 696 0.97 22 29 0.00043 0.048 14.6 0.2 2 23 759 780 758 780 0.97 23 29 0.027 3 9.0 1.9 1 23 788 810 788 810 0.96 24 29 0.0011 0.13 13.3 0.5 1 23 819 842 819 842 0.96 25 29 0.4 45 5.3 0.5 2 23 846 866 845 866 0.96 26 29 0.0038 0.42 11.7 5.0 1 23 904 927 904 927 0.95 27 29 0.042 4.7 8.4 3.3 1 23 959 982 959 982 0.98 28 29 9.9e-06 0.0011 19.8 0.2 1 21 1024 1044 1024 1045 0.97 29 29 2.2 2.5e+02 3.0 2.1 2 21 1155 1174 1154 1175 0.93
Sequence Information
- Coding Sequence
- ATGAGCGAATTCTATTCAGCAGCCGATGATTTGGcaataattctaaaaaagCCAGATGCAACGTTCCTAGAATGTTTGCAATGTTCTCAGACGTTTACGAATCGGGAGGAGCTTCTGGAGCACGCCGAGAGTCATAACCAGCCTCAGAAGTACCAGTGCAAGATCTGTTACAAATACCTGGCGACCCAGTCATCGATGAAAAACCACAGCCGAATCCACCGCAAAAGGAAGAACGTATGTGAGAAGTGTGGCAAGGGTTTTTACGTCCTGGGCCGTTTGAAGAGTCACATGGAGATCATCCACGGGGAGGAGATGCGCCACTTTTGTCAGCAGTGTCCCAAGGCGTTTGCTGTGCTACGCAGTCTGGAGTCGCACATAAAAAACGCTCATGGCAAGAAGGAGTACAACTGTACGATTTGCGACAAGTGGTTCTCAAAAAAATATGCCCTGGCGGAGCACCTGTCGATCGTGCACTCGAGCGCACGTTCCTTCCACTGCGAGATCTGCGACAAGATGTACGCGACCAAGCGAGCGATTCGCTACCACATCAGCAAGTCGCACTCGCAGCGGACCTACCCGTGTCCCTATTGCAGCAAGGAGCTGGCAACTCCGAGCAGCTTGAGCGTCCACGTGAAGAACATCCATCTGAAGACGAGGGAGCAGTGCAACAAGTGTCAAAAGTACCACGCGAGCCAGACCACGGACGTGTGTCCCCATATGACCCAGATGGAAATTTGTCGATTTCACTGTCAGATCTGCGACCTCAAATTCCGCACGCGCAACGAACTGAAGAGTCACAACTTCATGGTCCACAAGGAGAAGCAACATCTGTGCGACGAGTGCGGCCAGGTGTTTGATACGGGCGCCGAGTTGGAGAGCCACACAGCAGTTCACTCGACCGAGAAGAAGTTCATGTGTGACCTCTGTGGCAAAAAGTACCGGGGTCAGTCGTCCCTCAAACGACACCGTCTCAATCACTTTGAGAAACAGTTCCAGTGTTCACTCTGCGACCGGAAGTTCACCCGCGACTACCTCCTTAGACTGCACATGCCCACACATACCAACGAGAAGAACATCCAGTGCTCTTACTGTCCGATGTTCTTCAGGTCGCGCGCTAGTCTCAAACAGCACGAGTTCATCAAACACAAAACGAACGCACGATTCACCTGTAAGATCTGTTCCAAGACGTTCAATATCCTCAGGGCCTTTAAACAACACCAGAAAAAACATGAGAATCGCTACGAGTGCGACATCTGCAAGAAGCAGattggaaaaaagaacaagCTACAGGTGCACGTGGAGCAGCACATGAATCTGAACGAGGGCCCGGACGACTTTGTACTCAGCTGCGCGGAGTGTTCGTGTAAGTTCAAGACGCCCGACAAGATGAAACAGCACATGAACACGCACGTGAACGCACGACCTTTCAGTTGCAATGTTTGCAACAAATCCTTCTCCACGCCGGGGAACCTGCAGTCGCACTCGAAATATCACGTAAACAAACAATCGCACCTCTGCGAGCAGTGCGGTTACACTTGCCTGTTTGAGGAGGTCCTTGAAAATCACATTTTGAAGTACCATACGGGCGCCAAGGAGATTCGCAACACCACCGAGGGATTTTTTCCGCATGATGCGCAGGAGGACGAGGTGACCGAACGGTTCTCCTGCGAGGAGTGCGACAGACAGTTAGAGTCGCTTCAGTTGCTGAAGCTTCATAAAAAGACCCACCTTTACGAGTGCGCGACCTGCAAGCAGAACCTGAGAACGGAAAAGATGTTAAGTGCACACATCAGAAAGGAACACAGGACCAAGGTCCTTCACAAGTGTAGCTATTGTGACAAAAGCTTCAGCAAGAAAGTTCATCTGATGAGTCATGAGAAATCGCACAAAGTGGACCGGAAGAAGAAAACAGCAAATGAAAAGCCGATCAAAAGAGATCAGAGGAAAGCGATCGGTGAAGAACAAGtcgaaaaagttgaaaccgGACAAACAACAGTTTTGGCATATAAGAAGTACCATCCATGCAAGAAGTGTGATCTCATGTTCGGCACGTTGATGCGCTTGCGCTTGCACATGAAGACGTATCATGCTGAGGTTGTTCGAGTCACCAACCAAGAATCCAAGATTGCGGAAGATAACAATTCGGCTGCGGTCATTCAGAAAACCGTATGTGAATCAGAATCAAAGATGGAAGAGGACAAGACAGAGAAGAAAACTGAGCTATTGGTCAGTGACATCATCGACGAAAAAAGTCAACCGGAAAAGGTGTTGATCCAGTGTCAACGTTGTGACCAAGACTTCATCAACGAGGAGGCATTTATAACACACATGAGGAGTCATGATCTAAAGGTTAAAACGCTGCACCGTTGTCAGGAGTGCGAGCGAACTTTTGATCAGATGCAGGCTCTCGATGAGCATAAGAGCAGACATCGGGACAAGAGCATCGTACCCACGTTCTTCTGTCCACTTtgtgaaatgattttcaaaacgcAAAAGGGCATGAAGATTCATCTTATGAAGATACACAAGCACTGGAAGTGTCAGTACTGTTCTCAAGTGTTGTCCACTGACCTCTTTCAGATCCATCTTCTAACCCACGTGACTGAAACCGTGTCCAAGATGGACATCGAGGAGATGAACCAAACGGTTCTGGAATCAAACGTGGAGAGCGAGGAGTCTTACCTTAAGAGGCAAAAATTGAGGGTACTCCATCACTGTCCGTATTGCGACTTCAGCTTCACTATGTTCAAGAATTTCAATGCCCATCTGAGCAAGATCCATCAGTCCTTCAAGTGCAAGCCTTGCAATCTCATCATACCTCTGAACAAGGTCGAGGAGCACATGGGCTCCGAGGCCCACAAGGCGGATAAGACGTTCAAGTGCACTAACTGCGAATTGGAGTTCCCGAATTTCAATAAGTTGTACTATCATCGTAGAAGGAAGCACATGTTCAAATGTTCCGAGTGCGTTATGACATACCTGCCTACGTTGGACAGTTACAAGGACCATCTTAAAAGTCACGGAATCAATGTTGATACAAAGAGAAACATGACTAATCGAATAGCGAATTACACCTGCGCGGAATGCGGCAAGACCtttaaaacaaagaaaggACTTGCGCTCCATCTGAGGGACATACTGAAACCCAAGCCGAGGTGGCAGAAAATCATCTTCCGCTGTGACCCGATCTGGGCCAAGTGCAAGTTTTGCAACAAGATATTAAGAAACATGGCGTTGCATCTTCAAGAAGGCGTTTGTCCGGAGAAACGAAAACAGGAGTgggagaaaaaatttaatgggATGAAAGCTGCCATCGAGATAGCGGTCCTCAAAGCAGAGCAGAGTCGGAAAGTCGAACTTGAGGCAAGGAAATTAAAGCGTCAGAGGACGAAGGATGTGTTGAACTCTGTAGTCAAAAACTCGTTCGGGTATGATGTCACGAAGGGtaactgcaaaaaaatcatGTGCAGATATTGCAAGAACATGTTTTATCATCATGACGGATATGAGTATCATCTGAAATTCCGATGTGttggTGGAAAAAATGCTCAACGTCCAGTCTCAGGTGTGCACATAAAAGAATGCCAAGTTTTGATCAGAAAGATCCAGCTGTCGGAGATCCTTCGACATACTGGGTATAAAGTGACTTCGGTTTTGGATGGGAAAAGACGTCGCAGGCCACCAAAATGTTTCTGCTGCAAAGGTGGAGTTTGTAAAAATGTCGCGAAAATTCGCAAAGATCATACAAAATGGATGGAAAAGCACGAAGAATTCAAAAGTAACAAACAAGAAGATGAGTTGAATGAAGAAGATGTTTTGCAAGCTCTGGATATCAAAGTGGAAGCCGAGTACGTTTCGGATCACACCTACTGCAACAGCTCACTTTTAATAAGAGAATATGAAGCTGAAGTTCAGTCGTATGCAGAAAATGAGTTCGACTATCAGAGAAATGTATACTTCCAAAAATTGGTTTTCCAAGACTTCTTTGACTCATGGAAGGTTCTAGTGGATCCATTTTTATCCAAACAAGAACTCATCAATTTTCGCAAAGAAATCGTTACAATTGACATCCAAGCAGATTCTTCAACAAATATGTCCATTTTGATAACACTATGCAATGAAAATACCAGCATAGAAAAAGcttttggatattttttttcctgtgcCAATGTTCCTAATATCAAGTgcatcaattacaaaaatattgaaacgaatgaAGATGGAAAAACCGCATTCAAAACAACCCTCATTTTTGGTAACAAACCTACGGAGAAGATTATTTGTGGGATGAAAATCAACATAGAAGATTTCGATTTTGTCGAACAATTAGGCAGTTTGCAAGTTATGTCACAGACGATCGAAAATTATCTTCAACCAGACCTAAATTTTACCCTGATGGAATTTGGTTGTAAAAATGGTTTTCTCAGCGCGACGTTGTCAGATaaatacgAACAAGTAATAGGCATCGACCTAGACTCAGAAATCGCCACCGGAAGACGTTTGTGTACCTACAATAGTATCACCAATGTTACATATGTTGAAGCAACAAGCACTTCTATTAAAAGTATAATAGAAAGCGTTGCAAATGAGCAGCTCCATGCGATTGTAAACATTGATACGCAATGGATCACAAATTtaCATATAATGCGACAGCTTCGTTCCCTGAATCATCTAAAAAGTATCGTCCTCGTCACTACGTTCTCTCCAAAAGTGTATCTTCCAATATCAGAATTAATTACAGCGGACCCGTCGTTTATTGGTTATTCGTTTATACCGATCCGTTCTTCTGTCATTCAGAAAACGTTGGACAAAAATCAGTTTCAAATAATCATGTTGTTATTGCGCGAAGATATATATGAGCAAAAACCGATCAAGATTGAACCTGTGGATGCATCAAGCATGGTAGAAACGACAATTGAAGAAAacattaacaaatga
- Protein Sequence
- MSEFYSAADDLAIILKKPDATFLECLQCSQTFTNREELLEHAESHNQPQKYQCKICYKYLATQSSMKNHSRIHRKRKNVCEKCGKGFYVLGRLKSHMEIIHGEEMRHFCQQCPKAFAVLRSLESHIKNAHGKKEYNCTICDKWFSKKYALAEHLSIVHSSARSFHCEICDKMYATKRAIRYHISKSHSQRTYPCPYCSKELATPSSLSVHVKNIHLKTREQCNKCQKYHASQTTDVCPHMTQMEICRFHCQICDLKFRTRNELKSHNFMVHKEKQHLCDECGQVFDTGAELESHTAVHSTEKKFMCDLCGKKYRGQSSLKRHRLNHFEKQFQCSLCDRKFTRDYLLRLHMPTHTNEKNIQCSYCPMFFRSRASLKQHEFIKHKTNARFTCKICSKTFNILRAFKQHQKKHENRYECDICKKQIGKKNKLQVHVEQHMNLNEGPDDFVLSCAECSCKFKTPDKMKQHMNTHVNARPFSCNVCNKSFSTPGNLQSHSKYHVNKQSHLCEQCGYTCLFEEVLENHILKYHTGAKEIRNTTEGFFPHDAQEDEVTERFSCEECDRQLESLQLLKLHKKTHLYECATCKQNLRTEKMLSAHIRKEHRTKVLHKCSYCDKSFSKKVHLMSHEKSHKVDRKKKTANEKPIKRDQRKAIGEEQVEKVETGQTTVLAYKKYHPCKKCDLMFGTLMRLRLHMKTYHAEVVRVTNQESKIAEDNNSAAVIQKTVCESESKMEEDKTEKKTELLVSDIIDEKSQPEKVLIQCQRCDQDFINEEAFITHMRSHDLKVKTLHRCQECERTFDQMQALDEHKSRHRDKSIVPTFFCPLCEMIFKTQKGMKIHLMKIHKHWKCQYCSQVLSTDLFQIHLLTHVTETVSKMDIEEMNQTVLESNVESEESYLKRQKLRVLHHCPYCDFSFTMFKNFNAHLSKIHQSFKCKPCNLIIPLNKVEEHMGSEAHKADKTFKCTNCELEFPNFNKLYYHRRRKHMFKCSECVMTYLPTLDSYKDHLKSHGINVDTKRNMTNRIANYTCAECGKTFKTKKGLALHLRDILKPKPRWQKIIFRCDPIWAKCKFCNKILRNMALHLQEGVCPEKRKQEWEKKFNGMKAAIEIAVLKAEQSRKVELEARKLKRQRTKDVLNSVVKNSFGYDVTKGNCKKIMCRYCKNMFYHHDGYEYHLKFRCVGGKNAQRPVSGVHIKECQVLIRKIQLSEILRHTGYKVTSVLDGKRRRRPPKCFCCKGGVCKNVAKIRKDHTKWMEKHEEFKSNKQEDELNEEDVLQALDIKVEAEYVSDHTYCNSSLLIREYEAEVQSYAENEFDYQRNVYFQKLVFQDFFDSWKVLVDPFLSKQELINFRKEIVTIDIQADSSTNMSILITLCNENTSIEKAFGYFFSCANVPNIKCINYKNIETNEDGKTAFKTTLIFGNKPTEKIICGMKINIEDFDFVEQLGSLQVMSQTIENYLQPDLNFTLMEFGCKNGFLSATLSDKYEQVIGIDLDSEIATGRRLCTYNSITNVTYVEATSTSIKSIIESVANEQLHAIVNIDTQWITNLHIMRQLRSLNHLKSIVLVTTFSPKVYLPISELITADPSFIGYSFIPIRSSVIQKTLDKNQFQIIMLLLREDIYEQKPIKIEPVDASSMVETTIEENINK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -