Basic Information

Insect: Trissolcus brochymenae
Gene Symbol: -
Assembly: GCA_030523145.1
Location: JAQQRF010000359.1:85087-90301[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 9e-05 0.01 16.8 1.4 1 23 422 444 422 444 0.96

2 18 4e-05 0.0045 17.9 1.3 1 20 450 469 450 472 0.94

3 18 3e-05 0.0033 18.3 0.7 1 23 478 500 478 500 0.98

4 18 7.3e-05 0.0081 17.1 4.4 1 21 506 526 506 528 0.95

5 18 2.3e-05 0.0025 18.7 4.6 1 23 534 556 534 556 0.99

6 18 2.3e-05 0.0025 18.7 5.3 1 23 562 584 562 584 0.97

7 18 8.6e-06 0.00096 20.0 7.1 1 23 590 612 590 612 0.97

8 18 8.4e-08 9.3e-06 26.3 2.7 1 23 618 640 618 640 0.98

9 18 6.2e-05 0.0069 17.3 6.7 1 23 646 668 646 668 0.97

10 18 1.9e-05 0.0021 18.9 5.8 1 23 674 696 674 696 0.98

11 18 5.1e-07 5.7e-05 23.8 2.9 1 23 702 724 702 724 0.98

12 18 7.6e-06 0.00084 20.2 7.8 1 23 730 752 730 752 0.98

13 18 2.4e-05 0.0027 18.6 9.1 1 23 758 780 758 780 0.98

14 18 3.1e-05 0.0035 18.2 7.5 1 23 786 808 786 808 0.98

15 18 0.0015 0.17 12.9 8.8 1 21 814 834 814 836 0.94

16 18 8.4e-05 0.0093 16.9 0.3 1 23 842 864 842 864 0.97

17 18 0.027 3 9.0 4.5 1 23 874 896 874 896 0.98

18 18 9.6e-06 0.0011 19.8 1.1 1 23 902 924 902 924 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	9e-05	0.01	16.8	1.4	1	23	422	444	422	444	0.96
2	18	4e-05	0.0045	17.9	1.3	1	20	450	469	450	472	0.94
3	18	3e-05	0.0033	18.3	0.7	1	23	478	500	478	500	0.98
4	18	7.3e-05	0.0081	17.1	4.4	1	21	506	526	506	528	0.95
5	18	2.3e-05	0.0025	18.7	4.6	1	23	534	556	534	556	0.99
6	18	2.3e-05	0.0025	18.7	5.3	1	23	562	584	562	584	0.97
7	18	8.6e-06	0.00096	20.0	7.1	1	23	590	612	590	612	0.97
8	18	8.4e-08	9.3e-06	26.3	2.7	1	23	618	640	618	640	0.98
9	18	6.2e-05	0.0069	17.3	6.7	1	23	646	668	646	668	0.97
10	18	1.9e-05	0.0021	18.9	5.8	1	23	674	696	674	696	0.98
11	18	5.1e-07	5.7e-05	23.8	2.9	1	23	702	724	702	724	0.98
12	18	7.6e-06	0.00084	20.2	7.8	1	23	730	752	730	752	0.98
13	18	2.4e-05	0.0027	18.6	9.1	1	23	758	780	758	780	0.98
14	18	3.1e-05	0.0035	18.2	7.5	1	23	786	808	786	808	0.98
15	18	0.0015	0.17	12.9	8.8	1	21	814	834	814	836	0.94
16	18	8.4e-05	0.0093	16.9	0.3	1	23	842	864	842	864	0.97
17	18	0.027	3	9.0	4.5	1	23	874	896	874	896	0.98
18	18	9.6e-06	0.0011	19.8	1.1	1	23	902	924	902	924	0.97

Sequence Information

Coding Sequence: ATGAATAACGACCAACATGCATTGCCAGCGACCACGCAGGCCCAACAAGagGAAGTAAACGGTGGTCAGAGCAGTCGGGCATCGTACCCAGGCGGTTTGGTGGCCGCGACGAGTATTGGCAATGTGACGAGTACGCCACATACGTCGACAGCGGATCTGCGCGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAGTATTGGGTGCTCACCAACCTGTTTCCTGGGCCTCTGCAGCCGGTCTCGGTCTACCACCATCCGCACCACAACTCGAGCGCCACTAGGAATGGCGCCCAACCTGGGGCCGCCACCCCTGAGCCTTCGGCCAAGGAGGGCTCGGCTGCCCTCAACCAAGAGATGGCGCTTGCCACCGGCTCTCATCACCAGCACCAAGCTACGGTTAGCACAAGCGTCAGCCATCATGGCTCGATACCGTCCAACGCTCAGATCCCAGTGTCTCTGCCCGGATTGAACCTGGACGGGAGTCATATATCGGCGAGCGTGAGCCACCTGCAGGCGGCTCACGCTCAAATGCAGCAGCAGATGCAGtcgcagcagcagcaacaacaacagcagcagcagttgcagcagcagcagcaacagaaTCAGCAGTCCCAGCAGACGCATCATCAGATGCAGAACCATCAGAACGCTCAGAACACCGGACAGCCAGCGCCCAATCAGAGTGGCCAACGTGATGACAAATTGCAGGTGACGCAAGATTTGCAACAGAGTCTGAtgcagcaacaacagcagcaaaaCATCAACGTGAACATTGGTAGCGGCAACTCAAATGCTGACAATTCTGGACAAAATAACGCCGAGAAATCAGAAAAGAAAGAGGATCTGCGACAGTTGAACATGGCGCAGTTTCAAGTACCGGATTTAAAATCGAGTGGCCACATGATGGACGTGAGAACAGCCGATGGTTCGGTGGTGAAAATTAGCGCCGGCAACGAACAAGACCTCGCGAAAACATTGGGGGTGGAGATGGTGCAGAATATGTATAAGGTTAATGTGGAGGAATTCAACCAGCTTCTGGCTTACCATGAAGTTTTTGGCAAACTTGGTGGATTGCCTAGCGAGATAGCTTCTGCCAGCACTACTTTGGTTGGTGGAACAGTCCCGACCCAAACGGTCACAACCATTCAGAATGGCACGCCGATTGTCCAACAAGTGCAGCTGAATAAATTCGATATCAAGAGTAACGATGGCGAGGCTACCCCTGGACCCAGTGCGTCTCCTGTTTCCGTCGGCAGTCACGCCTGCGAAGTTTGtgggaaaatttttcaatttcgatacCAATTGATTGTTCATCGAAGATATCATACTGAAAGGAAACCTTTCACTTGTCAggtctGCGGAAAAGCATTTCCAAATGCTAATGATCTAACGCGTCATGGAAAATGTCACTTGGGTGGCTCGATGTTTACGTGCGCTGTGTGCTTTCACGTATTCGCCAACGCTCCTTCCTTGGAACGTCACATGAAACGTCATGCAACTGACAAGCCATACAACTGCACTGTCTGCGGCAAAAGTTTTGCAAGAAAGGAACACTTGGATAACCATACGAGGTGCCATACTGGTGAAACGCCATATCGATGTCAATATTGTGCAAAAACATTTACACGTAAGGAACACATGGTAAATCACGTACGCAAACATACCGGCGAGACGCCCCATCGTTGTGAtatctgtaaaaaaagtttcacacgAAAAGAGCACTTTATGAATCACGTGATGTGGCATACTGGAGAGACGCCTCATCACTGCCAAGTGTGCGGCAAAAAGTACACACGTAAGGAACATCTTGCAAACCATATGCGCTCGCACACCAACGACACGCCGTTTCGTTGTGAAATATGCgGTAAATCATTTACACGTAAAGAACATTTTACGAATCACATTATGTGGCACACGGGAGAGACACCGCATCGTTGTGATTTTTGCTCGAAAACTTTTACCAGGAAGGAGCACCTGCTTAACCATGTGCGCCAACATACTGGCGAATCTCCTCATCGTTGTGGTTTTTGCTCGAAATCATTCACTAGAAAAGAACATTTGGTTAATCATATTCGTCAACATACAGGCGAGACTCCTTTCCGATGTCAGTACTGTCCTAAAGCGTTCACCAGGAAGGATCATCTGGTGAATCACGTGAGACAGCACACAGGCGAATCGCCACACAAATGTCAGTACTGTACGAAATCGTTCACACGCAAGGAACACTTGACCAATCATGTGAGGCAACACACCGGCGAGTCCCCGCATCGCTGCCACTTCTGTTCCAAGTCCTTCACTCGCAAAGAACATCTTACAAATCATGTGCGCATTCACACCGGAGAATCACCACACCGATGTGAGTTCTGTCAGCGCACATTCACGCGCAAGGAACATCTCAACAATCACTTGCGACAGCACACCGGAGATTCTTCACATTGTTGCAACGTTTGCTCCAAACCTTTCACAAGAAAGGAACACCTCGTGAATCACATGCGATGTCACACGGGAGAGCGACCGTTCGTCTGCACCGAATGTGGTAAGAGTTTCCCGTTGAAGGGAAATCTACTGTTTCATGTGCGCTCGCACAACAAAGGAAGCAACGCCGAACGACCGTTCCGTTGCGATCTTTGCCCAAAAGACTTCATGTGCAAGGGCCATCTGGTATCTCATCGACGATCGCATTCGGACGAAAGGCCGCACAGTTGCCCAGCGTGTGGCAAGACCTTTGTCGAAAAGGGCAACATGTTGCGCCATTTGCGCAAACACGGAGCCGAGGAGCCACCTACGCAAGTCAGCACAACTTCCACGATCCCACAAACTGGCGTGCTACCGTTGCCGGCTGCTGCGGCTGCTGCCGCGGTTCTTGTTGGGCACCCACTCGCACCCTCCGCGTCGTCTGTTGTACCGCAACACACGGTGGTTGTACCCACGCCGCCAGGCGTGCTTACCTCCTACTAA
Protein Sequence: MNNDQHALPATTQAQQEEVNGGQSSRASYPGGLVAATSIGNVTSTPHTSTADLRVGTAVALASSVAKYWVLTNLFPGPLQPVSVYHHPHHNSSATRNGAQPGAATPEPSAKEGSAALNQEMALATGSHHQHQATVSTSVSHHGSIPSNAQIPVSLPGLNLDGSHISASVSHLQAAHAQMQQQMQSQQQQQQQQQQLQQQQQQNQQSQQTHHQMQNHQNAQNTGQPAPNQSGQRDDKLQVTQDLQQSLMQQQQQQNINVNIGSGNSNADNSGQNNAEKSEKKEDLRQLNMAQFQVPDLKSSGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEEFNQLLAYHEVFGKLGGLPSEIASASTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKSNDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFPNANDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHVRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPACGKTFVEKGNMLRHLRKHGAEEPPTQVSTTSTIPQTGVLPLPAAAAAAAVLVGHPLAPSASSVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_01493759;
80% Identity: -