Tbro011321.2
Basic Information
- Insect
- Trissolcus brochymenae
- Gene Symbol
- -
- Assembly
- GCA_030523145.1
- Location
- JAQQRF010000610.1:37191-37895[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-10 8e-07 29.2 0.0 2 35 12 45 11 53 0.88 2 2 8 9.8e+03 -3.1 0.0 33 41 157 165 157 167 0.82
Sequence Information
- Coding Sequence
- atgaaaaaaaattacaaaagtttttcgtACTCAGAGCAAGCTCTGAAAGATGCGATCAACAGTGTTGAGCACGAGCACCTAAGTATAAACAAAGCTGCCAACCAGTTCGGCATTCCAAAAGCTActcttttcaacaaaattagaaagagTTTAGATCGAGACCCTCTCGATCGAAAAATGGGACCTGACGCAGTTTTATCAACAGATGAAGAGTCACGAATCGAAGAGTGGGTATTGGCCAAGGCTTCACTAGGTTTCCCAATGCACCCGGATGAAGTAAAACTAGCCGtccaacaaattttgcaagcGGAAAAACGACCAAACCCCTTCAACAACTCTCTTTCGGAAAGAAAATGGATGAAATTGTTCTTGCAACGCCATCCAGCCATTGCGTTAAAAAACACAGAAGTCATTTCAAAAGCGAGGGCTGCAGTGACAGAAGAGGGTATAAGGATGTGGTTCGCAGAGCTGTGGAAttacttgaaagaaaaaggagcACTTGATATTTTGGAAGACGGCAAACGGGTAATGAATACTGATGAAACTGGTGTTGAAACATGTCCTAAATCAGGAAAACTGTTGGGTCCTAGAAGAGAAAGAAACTTCTAccgaatttcaaataattcagaGAAAGAATGTATAACTGTGCTTTGCACATTTCATGCGAATGGCGActcaatgtttacatttttcccCCGCGAATAA
- Protein Sequence
- MKKNYKSFSYSEQALKDAINSVEHEHLSINKAANQFGIPKATLFNKIRKSLDRDPLDRKMGPDAVLSTDEESRIEEWVLAKASLGFPMHPDEVKLAVQQILQAEKRPNPFNNSLSERKWMKLFLQRHPAIALKNTEVISKARAAVTEEGIRMWFAELWNYLKEKGALDILEDGKRVMNTDETGVETCPKSGKLLGPRRERNFYRISNNSEKECITVLCTFHANGDSMFTFFPRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -