Tbro002079.1
Basic Information
- Insect
- Trissolcus brochymenae
- Gene Symbol
- -
- Assembly
- GCA_030523145.1
- Location
- JAQQRF010000051.1:112112-114435[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-11 7.3e-08 32.5 0.2 8 41 4 36 1 39 0.89 2 2 7.9 9.7e+03 -3.1 0.0 30 38 79 87 79 90 0.84
Sequence Information
- Coding Sequence
- ATGAAATACGCCATGGCGGCGATCGACAACGGAATGTCCTTAAGGAAAGCTGCCCAACTgtatcaaatatcaaaatccGTGCTGCACCGTTACAAAATTCGCAATCTGCAACAGAGGACGGCTCTCAAATACGAGCCACAATTTCAGATGGAGAACTGCGCTGCCCCCTGGCTTGGGGCGCCGAGGCCGCGGATGACCTACGCGTGCAAGAACTGCGGTAAGATCTACCATTACTACTCGAGCTTGGCCAGGCACTTGAAGCACGAGTGTGGCGTCGAGCCCAAATTCTACTGTCCACTGTGCCCGTACAAGACCAAGCACAAGTCCAGCCTCAACACCCATCTCAACGGCAGGCACATGAAACACCTCAGTGACTTTTATTCCGTCAACGGAAACGAGCCCAaTTGGCACCCCTGGCAGAAAGGTTTCTCCGAAGTGTTCCAGTGCATCCAGTGCGGTAGAGAGTACAAGTCGAAGCGATCGTTGCGACGTCACGTAATCGTCGAGTGCGGCAAGGCGCCGAAACACAAATGCCCGTACTGTCCGCACTACAGCAAATACAAAGCCAGTATTGCCAAACACGTTGCGCACATACACCCGACTCTGCCCTTCCCTTGA
- Protein Sequence
- MKYAMAAIDNGMSLRKAAQLYQISKSVLHRYKIRNLQQRTALKYEPQFQMENCAAPWLGAPRPRMTYACKNCGKIYHYYSSLARHLKHECGVEPKFYCPLCPYKTKHKSSLNTHLNGRHMKHLSDFYSVNGNEPNWHPWQKGFSEVFQCIQCGREYKSKRSLRRHVIVECGKAPKHKCPYCPHYSKYKASIAKHVAHIHPTLPFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01493207;
- 90% Identity
- iTF_01493207;
- 80% Identity
- iTF_01493207;