Basic Information

Gene Symbol
stc
Assembly
GCA_947095525.1
Location
OX352738.1:16760410-16769738[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 2.5e+04 -4.4 1.6 15 19 551 555 550 555 0.81
2 13 0.042 5.3e+02 1.3 1.2 2 10 583 591 583 591 0.93
3 13 3.9e-05 0.49 10.9 18.1 4 19 599 614 597 614 0.93
4 13 9.4e-06 0.12 12.9 11.7 1 19 650 668 650 668 0.92
5 13 0.00024 3 8.4 10.4 1 18 709 726 709 727 0.98
6 13 5.1e-06 0.065 13.8 14.2 1 19 768 790 768 790 0.87
7 13 2 2.5e+04 -5.4 2.2 6 10 820 824 820 824 0.94
8 13 2.1e-05 0.26 11.8 3.8 1 13 830 842 830 843 0.95
9 13 0.042 5.2e+02 1.3 0.5 3 10 844 851 843 852 0.92
10 13 5.9e-05 0.74 10.4 12.4 3 19 859 875 857 875 0.92
11 13 0.0016 21 5.8 10.8 9 18 921 930 915 931 0.92
12 13 4.4e-08 0.00055 20.4 14.0 1 17 967 985 967 991 0.84
13 13 0.00041 5.1 7.7 3.0 1 13 997 1008 997 1009 0.93

Sequence Information

Coding Sequence
ATGTCCCAGTGGAACAACACATACGCTTATAACGACCAATATGAATCCTGGAACGGTGAGCCAAACAGCCAAGAATATGTTAACCAAACATACTATGCCAACAGAGCAGACCCATCCAACCAGTATGTGAGCTTTAACGAATTTCTATCGCAAATGCAAAACAATGGCGGCGCCAACGCAGCTAACACTGCTAGCTACAACAATGTTCCATATGAAAACTACCCTACAAGGCAATATAATTATGAAGATGTACCTTCAAATCCACCAAACCCTCAACTCAACAGTTATGATTATGCAGCTTCCTCCTCATCTAACATAGCTGAAACCTATCCAAGAAATGTACAAAATCAACACAATAGTGTATTACCTGACTCTAATGCATACTCAAATGAAGTAATTCTCAAGTCTAATCTCACTCCAACAGCTACAGAGTTTGTGCCAAAAGGTTCCACAATTAAACCTTCTACCAGCACTCACAACATTCCTAAACAAGAAGGTAAGACTCTAAATAGTGGAAATGAACTTAGAACTAGTTATAATAGAACAAATGAATCTAGGAATCATTATAATAATTTAAATGAGTCTAGAAATATTCATGGTAGTTCATCAGATGCTAACTGGAGAGAACGGCCTCAGATCTCACAACATAATAATGAAGTAAATAGATCAGAATCAAGTCATAGTACCCAAGAAGCTCACAGAAGTCAAGATTCAAACAGTCGTACTCGTAATCGTAACAATGATACTAACCGCAGACAATATGAAAAAAATAAACGCTATCAGGTATCAAACGATCAACAGTATGACTCTAACCAAGACACAAGTAGTCAACTTTATGAACCCAGCTCTCATGAATACAATAATAGAAAATATAAAGGAAGTAGCCAAAACCCTGAGTCAAGCCAACACTATGAATCAAATAATCATATCCAAGAATCTAATAGTGAATATTATGATTCACCTAGCCAAGACGGCACTTTTGAACCTAGTGGGCACAAATCTAATAGCCGACCACAAGAATCAAGTAGCCGCTATAATGACTCTAGCAACCGTAACCAAGAATCGAATGGTAGATACAATGATTCCAGTTACCGTAACTCTGACTCCAACAGTCGAAACTATGACTCAAATCGTTACGACTCTAGTAACAAGAGGGGCCAAAATAAAGTAAATTATAAGTCAAAGAAAGATACTGATAATAGAACATTTTATAACAACTCTATGAATAAAGAAAGTCAGGATGTGCGGGGATCTAGAGGTGAAGGGTCAGGACGTTACAAGAGCTATGTTGGTAGTCAGCGGTTGCGAGCTATAGAGCGAAACAGTACAGAAGATGAACAGTATGCAAATATGTACTTGCAACCAAAAGAGGAGAAAATGGAAAGGGAGAGAAAAGAAAAGGCAGAATATGTTCCGAGTCCAAACAAAACTAAGAAACAACATGCTAACAATGATCAAGCTCACAATGACATGACACAGCGTGAACGGTTGTCAGAACAGTTAGATAAGGGCACACTTGAGTGTTTGGTGTGTTGTGAGCGAGTGAAGCAGGTAGAACCTGTCTGGTCTTGCAACAACTGCTACCATGTGCTGCATCTGCGCTGTATCCGCAAGTGGGCCATGAGCAGTATGGTTGAGGGCAAGTGGCGTTGCCCTGCCTGCCAGAACACGAACGAAGCGATCCCCACGGAGTACCGCTGCATGTGTGGTGCTGTGCGCGCGCCCGAGTACCAGCGTGGCGCGGCCGGTGCACACACGTGTGGGCGCGCTTGTCGCCGCGCACGAGCCTGCCCGCATCCTTGCACGCTACTGTGCCACCCTGGGCCCTGCCCGCCTTGTCAGGCTACCGTCGCTAAGCAATGCGGTTGCGGTGCAGAGACTCGATCGGTACTGTGTAGCAGCAAGTTGCCGCAGGTGTGCGGGCGCGTGTGTAAGCGCACGCTCGAGTGTAACGTGCACACGTGCGTCAAGGACTGCCACGAAGGACCGTGTGAGACTTGCAGCGAAACCGTCACACAAGTGTGCTACTGCCCGGCGGCCAAGAGCCGGTCGGTGGCGTGCACGGCGGAGACGAGCGGGTCGGCGGCGTGGTCGTGCGCGGGCGAGTGCGGGCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGCGCCCTGCCACGCGCCGCCCTGCCGCGCCTGCGCGCTGCTGCCCAGCGAGGTGCGCGCGTGCCCCTGCGGGAAGACCAAGCTGGACCCGGACTCGCGAAAGTCGTGCACGGACCCTATCCCGCTGTGCGGCAACATCTGCGCCAAGCCACTAGAGTGCGGTCCCACCGGAGACAAGCATTTTTGCAAACTCAATTGCCATGAAGGTCCGTGCCCACCGTGTCCCGACAAGACAGTTCTACAATGCCGATGCGGTCACTCCAGCCGCGAGGTACCATGCGTCGATCTACCGCAGATGTACAATAATGTGCTGTGCCAGAAAAAATGTAATAAGAAGCTGTCGTGCGGGCGACACCGATGCCGCACGGTGTGCTGCGCGGGCTCGTCGCACCGCTGCGCCGTGGTGTGCGGGCGCACGCTGTCGTGCCAGACGCACCGCTGCGCCGAGTTCTGCCACACGGGGCACTGCGCCGCGTGCCCGCGCGTGAGCTTCGAGGAGCTCACGTGCGCGTGCGGCGCCGAGGTGCTGCTGCCGCCCGTGCGCTGCGGCACGCGCCCGCCCGCCTGCGCCGCGCCCTGCGCGCGCGCGCGCGCCTGCCAGCACCCGCCGCACCACGCCTGCCACGCGGGCGACTGCCCGCCCTGCGTCGTGCTCACCACCAAGCGCTGCCACGGGAACCATGAGGAACGGAAGACGATACCGTGCTCACAAGAGGAATTCTCGTGCGGTCTACCGTGCGGCAAACCGCTTCCTTGCGGCAAGCATACCTGTATCAAGACGTGCCACAAGGGTCCCTGTGACACTGGCAAGTGCACTCAGCCGTGCGAGGAGAAGCGTCCGACGTGCGGGCACGCGTGCGCAGCGGCGTGTCACTTCGGCGCGGCGAGCGGCTCGAGCGCGGCCGCGTGCCCGAGCGCCGCGCCGTGCCGCCGCGTCGTGCGCGCCACGTGCCCGTGCCGGCGCCGCCACGCCGACCGGTACTGCTGCGACAACGCCAGAGACTATACCAAGTTGATGAGCGCCCTAGCGGCTACGAAGATACAAGAAGGCGGTTCAGTGGACTTATCGGATGTTCAACGCCCCGGCAATATGCTTAAAACGTTGGACTGCGACGACGAGTGCCGGGTGGAAGCGCGCACGCGACAGCTTGCCCTGGCGTTGCAGATCCGCAACCCTGACGTGTCAGCCAAGCTGGCGCCGCGGTACAGCGAGCACGTGCGCGCCACGGCCGCGCGCGAGCCCTCCTTCGCGCAGCTCGTGCACGACAAGCTCACCGAGCTCGTGCAACTCGCCAAGAAGTCTAAACAGAAGACCCGCGCGCACTCGTTCCCGTCTATGAACTGGCAGAAGCGGCAATTCATCCACGAGATGTGCGAGCACTTCGGCTGTGACAGCATGGCCTACGACGCCGAACCGAATAGGAATGTCGTCGCTACCGCTGAAAAAGAGAAGTCGTGGCTGCCGGCCATGAGCGTGCTGGAGGTGCTGGCGCGCGAGGCGGGCAAGCGGCGCGTGCCGGGCCCCGTGCTGCGCGCGCCCGCGCACGCCGCGCCGCCCGCCGCGCACGCGCTCGCGCCCGCCGCTCTCGCTAACAAATCGTCTGGGGGCTGGGCGACTCTAACTTCGACGAACGCGTGGGCCGCTCGCAGCCAGCCCAAGCCACAGCCGGCCCGCCAGCCGCCGGCAGACAAGGTCGACTACTTCGACAACCCACCCGACAACTAA
Protein Sequence
MSQWNNTYAYNDQYESWNGEPNSQEYVNQTYYANRADPSNQYVSFNEFLSQMQNNGGANAANTASYNNVPYENYPTRQYNYEDVPSNPPNPQLNSYDYAASSSSNIAETYPRNVQNQHNSVLPDSNAYSNEVILKSNLTPTATEFVPKGSTIKPSTSTHNIPKQEGKTLNSGNELRTSYNRTNESRNHYNNLNESRNIHGSSSDANWRERPQISQHNNEVNRSESSHSTQEAHRSQDSNSRTRNRNNDTNRRQYEKNKRYQVSNDQQYDSNQDTSSQLYEPSSHEYNNRKYKGSSQNPESSQHYESNNHIQESNSEYYDSPSQDGTFEPSGHKSNSRPQESSSRYNDSSNRNQESNGRYNDSSYRNSDSNSRNYDSNRYDSSNKRGQNKVNYKSKKDTDNRTFYNNSMNKESQDVRGSRGEGSGRYKSYVGSQRLRAIERNSTEDEQYANMYLQPKEEKMERERKEKAEYVPSPNKTKKQHANNDQAHNDMTQRERLSEQLDKGTLECLVCCERVKQVEPVWSCNNCYHVLHLRCIRKWAMSSMVEGKWRCPACQNTNEAIPTEYRCMCGAVRAPEYQRGAAGAHTCGRACRRARACPHPCTLLCHPGPCPPCQATVAKQCGCGAETRSVLCSSKLPQVCGRVCKRTLECNVHTCVKDCHEGPCETCSETVTQVCYCPAAKSRSVACTAETSGSAAWSCAGECGRVLACGAHVCRAPCHAPPCRACALLPSEVRACPCGKTKLDPDSRKSCTDPIPLCGNICAKPLECGPTGDKHFCKLNCHEGPCPPCPDKTVLQCRCGHSSREVPCVDLPQMYNNVLCQKKCNKKLSCGRHRCRTVCCAGSSHRCAVVCGRTLSCQTHRCAEFCHTGHCAACPRVSFEELTCACGAEVLLPPVRCGTRPPACAAPCARARACQHPPHHACHAGDCPPCVVLTTKRCHGNHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGKCTQPCEEKRPTCGHACAAACHFGAASGSSAAACPSAAPCRRVVRATCPCRRRHADRYCCDNARDYTKLMSALAATKIQEGGSVDLSDVQRPGNMLKTLDCDDECRVEARTRQLALALQIRNPDVSAKLAPRYSEHVRATAAREPSFAQLVHDKLTELVQLAKKSKQKTRAHSFPSMNWQKRQFIHEMCEHFGCDSMAYDAEPNRNVVATAEKEKSWLPAMSVLEVLAREAGKRRVPGPVLRAPAHAAPPAAHALAPAALANKSSGGWATLTSTNAWAARSQPKPQPARQPPADKVDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00870239;
90% Identity
-
80% Identity
-