Temo008396.1
Basic Information
- Insect
- Trisateles emortualis
- Gene Symbol
- -
- Assembly
- GCA_947095525.1
- Location
- OX352752.1:6047088-6058587[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5e-06 0.00037 21.3 0.2 1 23 265 287 265 287 0.98 2 12 0.032 2.4 9.3 1.9 1 23 295 318 295 318 0.94 3 12 5.4 4e+02 2.3 0.3 1 23 322 345 322 345 0.89 4 12 0.099 7.4 7.7 0.8 1 23 412 434 412 434 0.98 5 12 1 75 4.6 5.1 2 23 443 465 442 465 0.95 6 12 8.9 6.6e+02 1.6 1.0 1 23 469 491 469 491 0.79 7 12 0.00013 0.0096 16.8 2.7 1 23 496 519 496 519 0.98 8 12 0.01 0.77 10.8 1.0 3 23 525 546 523 546 0.94 9 12 0.059 4.4 8.4 0.9 2 23 625 647 624 647 0.96 10 12 5.4e-07 4e-05 24.3 2.1 1 23 656 678 656 678 0.98 11 12 4.4e-06 0.00033 21.4 3.4 1 23 684 706 684 706 0.97 12 12 0.0042 0.31 12.0 3.1 1 23 712 735 712 735 0.95
Sequence Information
- Coding Sequence
- ATGAACGATTTAAAAGCATGTGCGGTGTGTTTAAGCACTGATATTAAGTTGTACAGCATTGAACATGGAAAGTTAAAAAACGATTTCCAGCAGATTTCTGGTTTTCGGATATGCAAGAGCAGTGGTCTGCCAAATTATTTATGTTACCAGTGTACAGCTCGCCTGAAGAGCTGTATAAAGTTTCGGGACAAATGTCAACAAGGCCATAATGCCCTGCTAGAAATATTAATGAGAGATAAGCAGATTACGAAAGCAAGTCTCAACGAATGTAACAACAATTTGGAAGACATTATAACACCATTATCATATATGAATATAGATAAAGTTCACTTTGAACAAGTTACATTTAACGATTTACTATGGACGAAGGACAAAGAGGATTTTTATTTTAGCAATTTTAAAAAGGAGACAATTCCTGTATTCGTTTGGAATATTTTTTTGCCCGATAAGATTGTGAACACAGTTAACAAGTACATAAACGTAGATGAAAATATATCAAATAACAACAATAATGAAAATGAACCAACTAGCACAGATGATGAGTCTCATGTATATTTAGATGCATTTGATTCTGACCATGGAACGACAGAATCAATTGCGGACGATGATCATTTTTCTATTGTTGATAAAGAAGAGGTGTCCGGGGTGAATGATACGATTTGTAAAATTCAGAGTGTCAAAAGTAGTGTTGAGAAATCGATAGAAGAAGAGTATGCATTGATGATTCCGATGTCAGATCAAGAAGCTAAAGCCATTGCAGAGGCAAATAAAAAACATGTGTCTCCCGGAAAATATAATTGTGAAATATGTAGCAAAGTATTTGCCAGTGAGAACCTACTGAAGGGACATATGAGGATGCATGATAAGCACATCAGCGGCCATTACCACTGCGAACTATGTGACTATTACTATAAAACGGAACTTTTGTTAAATAATCACATTACTGAGAAACATAAGTATAAATATCTGTGTACAAAATGTCCTGCAGTCAGCTTTGAAAGAATCTTGGCCAAAAAACATTATAGAAATGCTCACTATCAAAACCGACCGAATGAACCACAACCAAGTTGGGTACGTCGACGTGGTAAGAATGACCAAGGCGTGAAAAAAAAGCCCATTAAAAAAAAGAAGATGATACCAAAAGATTTCATAGTTTGTACTCCCATTGGTCATGAGGAACAGTATGCTATAGTTCAGCAAAGACAACATACAAAGAACTATAGGGAGGCAAAGTACCGATGTGACTTGTGTTTCATAGGTTTACAACAATCATCGACAATTGATAAACATATGAAGAAACATGATCCGCAATACTCTGGTGAGCTACAGTGCGATATTTGCAAGCTATACTTTAAGAATCATATCAGGATGTATCATCATATGACCAAGTCGCATAGATATAAGTTCTCCTGTGAGAAATGTGATTATTTGGGTTATGATAATACCCACGCTTTGGCACACAGTATGTTTCACAAAAATGTAAAGTACAAGTGTCCGCACTGTGATCAAGAATTCACGAAGCCATCGACGCGATTCAGTCACGTCAGAATAAAACATCCATCCATGCACCTCTGTAACCTGTGCGGACATAGCTTCATTAGTGATGCAGGACTGGCTTCTCACAAACGACTAGTCCACACTAAAGAGGAGATAGAGATAAGTTCAACAATGGTAGTACACAAGTCTGACCCGTCGTACTGCGCTGACTGTGATGTACAGTTTCTGAACGCGATCGCCTTCGATACGCATCTGGGGAGCTCCTACAAGCATACTACTACCAATGTGTCAACCACGGTCAGGCATCGTCGAAAGATAGAGGGACTCAAGAACGGGGTATCCTTCATCCACTACACTAGAGACCCTAACACCTTGAAATGTGAAGTGTGTGGTATCGTATCGGCGAACGAGCACCAGGCACTAAAGCACCACAAGTCGGAACACCCCGACATTGAATTCCCCAAGAAATACATGTGCGATATATGCGGACACAAAACCAAGCAATCTTCGAACCTGATATCGCATATGCGAACTCACAGTGACGAGAAACAATTTAAGTGTCCACAGTGTGACCGAAGATTCAAGCAATCTACCCATTTATATAGGCATCTcgtcGTGCACACAGGTGAGAAACGCTACGCGTGCCATATCTGTGGCTCTCGTTTTACACAGAGCAGTTCCCGCCTATATCACATAAACCACGTACACTTCAAAATACCGTATCCACGAAGAAAAAGGATGAACCAACAGCAAGCTCAGGAAGAACAAACTAATACAACGGTGACGTCGACTACCTCGGATAGGCCTTTGTGCGATACTCCGGGAGCCTATCTTAACGCTTAA
- Protein Sequence
- MNDLKACAVCLSTDIKLYSIEHGKLKNDFQQISGFRICKSSGLPNYLCYQCTARLKSCIKFRDKCQQGHNALLEILMRDKQITKASLNECNNNLEDIITPLSYMNIDKVHFEQVTFNDLLWTKDKEDFYFSNFKKETIPVFVWNIFLPDKIVNTVNKYINVDENISNNNNNENEPTSTDDESHVYLDAFDSDHGTTESIADDDHFSIVDKEEVSGVNDTICKIQSVKSSVEKSIEEEYALMIPMSDQEAKAIAEANKKHVSPGKYNCEICSKVFASENLLKGHMRMHDKHISGHYHCELCDYYYKTELLLNNHITEKHKYKYLCTKCPAVSFERILAKKHYRNAHYQNRPNEPQPSWVRRRGKNDQGVKKKPIKKKKMIPKDFIVCTPIGHEEQYAIVQQRQHTKNYREAKYRCDLCFIGLQQSSTIDKHMKKHDPQYSGELQCDICKLYFKNHIRMYHHMTKSHRYKFSCEKCDYLGYDNTHALAHSMFHKNVKYKCPHCDQEFTKPSTRFSHVRIKHPSMHLCNLCGHSFISDAGLASHKRLVHTKEEIEISSTMVVHKSDPSYCADCDVQFLNAIAFDTHLGSSYKHTTTNVSTTVRHRRKIEGLKNGVSFIHYTRDPNTLKCEVCGIVSANEHQALKHHKSEHPDIEFPKKYMCDICGHKTKQSSNLISHMRTHSDEKQFKCPQCDRRFKQSTHLYRHLVVHTGEKRYACHICGSRFTQSSSRLYHINHVHFKIPYPRRKRMNQQQAQEEQTNTTVTSTTSDRPLCDTPGAYLNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -