Temo005531.1
Basic Information
- Insect
- Trisateles emortualis
- Gene Symbol
- -
- Assembly
- GCA_947095525.1
- Location
- OX352759.1:7132068-7143067[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.37 27 5.9 3.4 1 23 234 257 234 257 0.90 2 11 0.0039 0.29 12.2 1.1 2 23 267 288 266 288 0.97 3 11 0.21 15 6.7 1.2 1 22 292 313 292 315 0.80 4 11 0.52 39 5.5 5.1 1 23 326 348 326 348 0.98 5 11 1.7e-05 0.0012 19.6 0.7 2 23 353 375 352 375 0.95 6 11 0.0069 0.51 11.4 4.3 1 20 382 401 382 402 0.95 7 11 0.0041 0.3 12.1 0.8 2 23 413 434 413 434 0.96 8 11 0.00025 0.019 15.9 0.0 1 23 445 468 445 468 0.93 9 11 0.00023 0.017 16.0 2.6 1 23 474 497 474 497 0.93 10 11 3.5e-05 0.0026 18.6 0.6 3 23 508 528 507 528 0.98 11 11 0.006 0.44 11.6 2.6 2 23 535 557 534 557 0.95
Sequence Information
- Coding Sequence
- ATGGGCGATATATGCATGTGTTGTACATCGCAGAACACAACTATGATACCTATGAAAAATTGTAAACATACAAAATTTTTGAAGACTTACATCAAATTTAAGTTTGACGATCGCAATGTATTTGTTTGTGTTATATGCCACAACATGCTGAAGAAAATTGATACATTTAAACAGCAAATTGAAGAAAGCATAGCTTTACTTACGGATCAGACACATATATTTAATCTAACAAAGTTACATAACCTTACAAGCTCCCTCCCACAAATAACAGACTCAACAAGACTCTCCAACCTTCTAGACTTCGTTTTTAAGGTCGAAGTAGATGACACACAAAAAGAAGAACCCACTGACATACAAGAAGTGGATTGTATGGGAACAGATCATGACTATAGCATTCAAAATTATGACGACATAGTAACAACAACTACGGTTACAAAACTCGAATACGATTCAGAAGAGACAGTTTCGGATATAGAATTTGCTGGCACAAAAGATAAAAACCAAGATTTAGTCGATAAAACCGATAAACAAATTGTCGTAATCGATACTGAAGCGAAAAAACCAGCAAAGCAAGATGAACAAACAGATCAATATGTTAACTATTATGAAGGAAGAATTAAGATAATAAATTTGAGTATGAAACAGATGAATGAAGAGAGGATGGCTAATGCTAATGATCCTAAATATTTAAATTTGCCGTTCAAATGCGAGTTTTGTATTATTGGTTTTGACCATGAGCACAACTTGCAAAAGCATAATGAAAATCGACATAAAAAGAGACTGATAGATAAGCGACTCAAATGTAATATTTGTACATCGGTATTGAAAACGAAAGCCTCTTATTATGAGCACATGAAGCGCCACTTATTGAGATACGAGTGTGTGGATTGTAAGAAGAGATATACCAACATATATAAAAGTATCGAACATTATAATGAAAAGCATCTACCGCCAGGGGTTGCACTTGATTATGGGTATACCTGTCGACTATGTGGATACCACACTAAcctaaaccgCAAATATCGATATCATATGGACAAACACAAGGCAAGGCTCGAATGTAAAATTTGCTACAAGTTTTTTGTTAATGCATCATCTTTGAAGACACATTTGTTCACAATACACTCTCAGTCATCGCGGGTGTACAGCTGCACCAAGTGCAACAAGCAGTACCGCAACCGCTCAGGGTTGTCCTACCACAGGTGCCCGAAGGCTTCGCAGGAGGACCCTCCTGCCTACTGCACCGTGTGTAATACCCACTACGTCACTGTCAAGTCACTCAACGCTCACCTAGCGTCACACTCTAACCATATTAAGGATAAAGACAAGAGATTCATTTGCGATGACTGTGGAGCCAAGTTTGTAAGGAAGATTGGTCTAGAAGACCATATCACTTGGGAACATCTTAAAATTGTCCGCCATCGATGTACCAAATGTGATAAAGAATTTCGCTCCAAGAAGGGTCTTTATAGTCACGTAGCATATGTGCATAATAAGGTGAGACCAGTGAAAGATAAGATCTGCCATATGTGTGGGATTGCATTTTCGACGAAAGCGATCCTCCAGTCACACATACGCACACACACCGGAGAGCGCCCTCTATCGTGTCGACACTGTAACGCAACGTTCGGACACTCTGGCGCCCTCTATACACACATTAAACTTAAacataagaaagttaaataa
- Protein Sequence
- MGDICMCCTSQNTTMIPMKNCKHTKFLKTYIKFKFDDRNVFVCVICHNMLKKIDTFKQQIEESIALLTDQTHIFNLTKLHNLTSSLPQITDSTRLSNLLDFVFKVEVDDTQKEEPTDIQEVDCMGTDHDYSIQNYDDIVTTTTVTKLEYDSEETVSDIEFAGTKDKNQDLVDKTDKQIVVIDTEAKKPAKQDEQTDQYVNYYEGRIKIINLSMKQMNEERMANANDPKYLNLPFKCEFCIIGFDHEHNLQKHNENRHKKRLIDKRLKCNICTSVLKTKASYYEHMKRHLLRYECVDCKKRYTNIYKSIEHYNEKHLPPGVALDYGYTCRLCGYHTNLNRKYRYHMDKHKARLECKICYKFFVNASSLKTHLFTIHSQSSRVYSCTKCNKQYRNRSGLSYHRCPKASQEDPPAYCTVCNTHYVTVKSLNAHLASHSNHIKDKDKRFICDDCGAKFVRKIGLEDHITWEHLKIVRHRCTKCDKEFRSKKGLYSHVAYVHNKVRPVKDKICHMCGIAFSTKAILQSHIRTHTGERPLSCRHCNATFGHSGALYTHIKLKHKKVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -