Basic Information

Gene Symbol
-
Assembly
GCA_947095525.1
Location
OX352739.1:17648366-17655111[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2.2 1.6e+02 3.5 0.4 2 23 6 27 5 27 0.96
2 14 0.71 53 5.0 0.2 1 23 1004 1027 1004 1027 0.92
3 14 6.5 4.8e+02 2.0 0.1 1 23 1136 1158 1136 1158 0.86
4 14 9.2e-06 0.00068 20.4 2.2 2 23 1161 1182 1160 1182 0.97
5 14 0.00019 0.014 16.3 2.5 1 23 1188 1210 1188 1210 0.98
6 14 0.011 0.79 10.8 3.0 2 23 1217 1238 1216 1239 0.94
7 14 0.35 26 6.0 0.1 6 23 1253 1270 1252 1270 0.98
8 14 0.0018 0.14 13.2 0.8 3 23 1277 1298 1276 1298 0.97
9 14 0.41 30 5.8 0.0 2 23 1316 1336 1315 1336 0.95
10 14 0.00013 0.0098 16.8 0.7 1 20 1342 1361 1342 1364 0.89
11 14 0.11 8.2 7.6 0.0 1 23 1372 1394 1372 1394 0.97
12 14 0.00079 0.058 14.3 6.8 1 23 1400 1422 1400 1422 0.98
13 14 2.8e-05 0.0021 18.9 1.5 1 23 1428 1452 1428 1452 0.97
14 14 0.001 0.077 14.0 5.1 1 23 1458 1480 1458 1481 0.95

Sequence Information

Coding Sequence
ATGGACCAGCTCGTGCAGTGTCCCGTGTGCACACTCTTTCTGCACAATGGCATGACCCTCGAGTCACATTTAGACACACATCCTAAGGATCAAGTTATAAAAGCATTGTGTAATCTGACAACACCTAAGCCTTCCAGTTATGGAAGCAGGACTCCCACCCCATTACATTCTGAACGGTCATACAGAAGCAGGTCACGGACACCTGCCACAGATGAAAGCAGGTGGAATGGATCCCACAGAAGTGATGACCGCTACTGGCGAAGAACACCTAGTAGAACCCCAAAGGCCAATGTTATGCCAAGTGCTTCTAGAAATGGAACACCTGATATTCGGGTGGTTGATATAAATTTTGACAGTGCTAGTGGTGGTTCTGGTGCATCTAATGCATCTCAACTTTCAGGTGCTCCTTTTTTAATGAAAGCTGATAAGATCCAACAGACTTACCAATCTCCTCCAATATCTGATTTTGATTCTCAGTATATTTACTATGACCAACCAGAGGACAGGGAGGTGAAGTATTCTCGGAGCGCTGAATACAATTCAATGAGCCATCGTAACAACATGTTTGCTTACAACAATGTGATGCCAGCTGGAGCACCAGCAGTCAAATTGTTACCAAACGTGCCTAAAAGAGGCAATGACCTTACAAAAATTTTACCAAAACCAAATAATATACTCCTTAAAAATATGGGTGGTGTGCAATATATAAGTCCAGGATCTAAACCAATGCATGTTATGATGCCGAGTGCATCTACATTTGTTCAGAAAAATGTGCAAAACAATATGATTATGACAGGTAATGTGCCAAACCTGCAGATTCAAATAGATAGCAAAACAGGAGCGCCACCTGTGGCTGGCAACCAGCTAAACCAAATGACTCCTGGTGCTTTCACCCCAGGCACTACTGTTGTTACCCAGAACTCGCAAATCATTTACAGAGAAATGGTCAAAAATATAGATGGTAAGCCTTTTATTACTAGCATGCCCACCATTCTAGGTGCTCATGATAATGTCACAAATCTAGCTCAAACTAGTTCTTTGTACCAAAATGTAATGGTTGTTGATCAGTTTGGAAATACCTCATGTATGTACAGTACACCTCAACAGATAGTACCCAAGTGTCCAACAACTGCTTACAATGATGCATCATCTCTAGCAACTAATTCAACTCGTCATGTAGAAAAAGCTTCTGCGAATGCGAATGACCCTAAAACTCTCATAATTGAGGTTGGTCCCATTGTACCTCCAGGGTCAGGTCAACCATCCAGTTCCAGTTCACATTCAAATACAAATAGTCCAGTTGAAAAACCTGACAAACATATAAATGAAAATGCTGATGCGAAAAATGAAACATCGGGATCTACTAGAGGCTTAAAAATTCTTAGTAACATAAAAGTTGAAGTTCCAGTACAGCATCATAAAAATATGGTGAACACAGTAATGGATCTTACGGGACCTAGCGATACTGAGTATCCTGTAGAACGGGTGCCTTCACCAGAAAAGATTTTGCCAGATTTAGATGACAACAGTGACAACCATCAAATGTTGTCTAATGAGACCATTCAACCATCTGAATCAAGTGCTGACAGTGTACCATCCTCATTTGCTGTGATAAAGACTAAATCTCAATCAAGTGATTCAAATAAAAGTATTATTGAAAGCAAAGTGGACACAGAGTGCTCTGATAGTTGCCCTGTGCCAGATTTAATTTGTAATGAGAAACCTTCCATATCACCTTGTAGTGAATTGTCAGAAAATGGTGATAATTCAACCGATCATACCTCAATATCTCCTAAACCTGTGAGTAGTAAAATTAGCCATAGTAAAATAAATTCTCCAGAAAAGAAAATTCAGCTTCCACAGAAGCCATACAGGCACAACACATTAAGACTGAACAATATTTATGTGAAGAAACACAAAAAAGTTTTGCAAATAAAGAATTCTAAGGGGTTTCCTGCAAAATCAACAAGTAAAAAGGTAGAACCTAAAGCTTCGTCATCTAGTGGCAAAGCACCCGAAAGTTTTACAATGAATAAATTGCATCAAATGGATAAAAGTGAGAGTCAAGAAAAGTCTAGTGTTTTACAAACAATATCAGTAGAGGAGATTAAAGTTAATGATGATAATAATGAGTTTGATGCTGACACAGAGGAGCAGTCCATGGATTTAGAACCTGTGGCCCCTTCCAGTATGGACCAACATAATGGGTATACCTTAAACACTGAAATAATAGTACAAGTAAAGGAGGAAAACTCAAGTAATGAAGGGGGATTCAGTAATCATACGGCCACGTCAGACCGTGACCTAGCACCACTAGAATCATTGCGTCCCATAAATGTTGTACCCTATGCAAATATGTCAGGTGATTTTGAGGATGACTCAAATGATAGGGAATTACTAGACCTTGAAACAGCATCCAAAAACAAACAGTTTGTCAGTATGATAAACGAGAATTACTTTGGTGACAATATCTACGCGGACTACTTTACCCCCGATCGAGTGGAGTCGTTCGACGCGGAGCGCGAGGCCGCGAGCTATAAGGAGTCATCTAAAGAGGGTATGTATAATATTTGGGGTGAACCATCGCAAAAAGAACACGAAAATGAATTTGTTCTACCTAACTTTATACACGAAAGCTACAAAATAGCCGAGAGTAGTGGAATAGATTATTCGGAGATTGGTAGAGAGGGACAGGGCGATGGCGAAGGTGATGGGTGCGAGCGCGATAGCAAGGCGGACGTGTTAAGCGAAGGTCGCAGTGAAGGCGAGGCGCCGCTTAACATTTGCGCCGACGAGCGAATGCCGCCGCGCGGCGAACTTAGCGGGCAGGAGAGCAATGGAGACATGGAGTCGCCTTGGGGTGGGATGTACACGGACGTGCCGCCGACAGAGCCGTACGATCTTATCGCCAGGGAGAGCTGGGTATCGGACGGCTCCGATGTCGACGTCACCGAGAAGAGGGAAACGCTTGAAGAGGAGCTCCAATTCCCCAAGTCCCTGGGGCGCGTGTATACGTGCGCGCTGTGCGGCGTCAAAGCTCACTCGTTGAAGGAGCTGCGGGCGCACAAGGCTCTCGTGCACGCGCACGTACACGCGCACGTACACGCGCACGCGCACGCGCACGTGGGCCACCCGTCCCACGTGGCGCACGTGGCGCCCGCCACCCCCTCCCCGCCGCTCAAGCTCACGCACGCGCCGCACACGTACAGTCGCCTCGTCACCGACAGAAAGATCAAGAAGGAGGAGAAGTCCCACGACAGCGTAACTCTAACGAACAACATCCTGGGGATGGACTCGAAGGAACCAATCACGTCGACTATCCTACAAGTGTACGACACTCTGGAGGAAGCCAAGCCGAAGATCGAGACTCTGATCAAGCAGGAAACTAAGCGGAGACGGAAAGATTACGTGTGTCCTACGTGTAAGGTGGATCAGGGGACCGACGCGGAGTTCAACGCTCATCTCAAAATTCACCCGTTGGAGTGTCTCACCTGTGGGAAGTGTTTCTTTAGAAGAGCAAACTTAGCGCTGCATATGAAAACTCATTTAGGAATAAAAAATTACAAATGCGACGTTTGCGAAAAGCGGTTTATAACTCGTCAGAAGTTAATGGAGCACCACAATATTCACACCGGCCGGCAACCAATCAAGTGTACGATGTGCGACGACACCTTCCGCAGATACTCCAACATGGTGCAGCATAGGGACCGGCACCACCTGGCCAAGCGCGCCAAGGTGCGCGACTACGTGTGCGCGTGCGGGGCCGTGTTCCACTCGCGCGCCAAGCTCGCGTGGCACCGCGAGACGCACGACGAGCGGCCCAAGGCGTGCCCGTACTGCAGCGACAAGTTCGTGCACGCGGCCTCGCTCACGCGCCACGTGCGCCGCACGCACAACGCGCACTTCCGCAAGCTGGAGCGCGCCGACGAGCCGCCCGCCAACGTGCCGTGCCCCGTGTGCAAGCAGCTGTACCTGCGCGCCAACTTGCGCGCGCACGTGCTCACGCACAGCGGGGCGCGCCCGCACGCGTGCGTGGTGTGCGGCAAGGCCTTCAGCACCAAGTGGAACCTCAAGCTGCACCGCTGGACGCACGTGTCGCGCTCGGCCAAGCCCTTCCGCTGCGCGCTGTGCGCGGGCGCGTTCGTGCGCCTGCCCGAGTACACGGCGCACATGAACGCGCACCGCGCCGTCCGCCCGTACACGTGCAACCACTGCGGCCGCCAGTTCATCCGCAAGTACAACTGCCAGCGGCACGTGCGCGAGCACGAGCAGGCCAAGCGGTTCGTGTGCAAGGTGCCGGACTGCGGCAAGTCGTTCCACCGCACGTACTACCTGTCCGAGCACATGAAGGTCCACAGCGGCGCGCGGCCCTTCTCGTGCAACATCTGCGGCAAGACGTCCAGCAACAAGTCCAACCACAACAAGCACGTGAAGATCCACCACGCGCGCGAGCCCGTGGCCACGGAGGCCTAG
Protein Sequence
MDQLVQCPVCTLFLHNGMTLESHLDTHPKDQVIKALCNLTTPKPSSYGSRTPTPLHSERSYRSRSRTPATDESRWNGSHRSDDRYWRRTPSRTPKANVMPSASRNGTPDIRVVDINFDSASGGSGASNASQLSGAPFLMKADKIQQTYQSPPISDFDSQYIYYDQPEDREVKYSRSAEYNSMSHRNNMFAYNNVMPAGAPAVKLLPNVPKRGNDLTKILPKPNNILLKNMGGVQYISPGSKPMHVMMPSASTFVQKNVQNNMIMTGNVPNLQIQIDSKTGAPPVAGNQLNQMTPGAFTPGTTVVTQNSQIIYREMVKNIDGKPFITSMPTILGAHDNVTNLAQTSSLYQNVMVVDQFGNTSCMYSTPQQIVPKCPTTAYNDASSLATNSTRHVEKASANANDPKTLIIEVGPIVPPGSGQPSSSSSHSNTNSPVEKPDKHINENADAKNETSGSTRGLKILSNIKVEVPVQHHKNMVNTVMDLTGPSDTEYPVERVPSPEKILPDLDDNSDNHQMLSNETIQPSESSADSVPSSFAVIKTKSQSSDSNKSIIESKVDTECSDSCPVPDLICNEKPSISPCSELSENGDNSTDHTSISPKPVSSKISHSKINSPEKKIQLPQKPYRHNTLRLNNIYVKKHKKVLQIKNSKGFPAKSTSKKVEPKASSSSGKAPESFTMNKLHQMDKSESQEKSSVLQTISVEEIKVNDDNNEFDADTEEQSMDLEPVAPSSMDQHNGYTLNTEIIVQVKEENSSNEGGFSNHTATSDRDLAPLESLRPINVVPYANMSGDFEDDSNDRELLDLETASKNKQFVSMINENYFGDNIYADYFTPDRVESFDAEREAASYKESSKEGMYNIWGEPSQKEHENEFVLPNFIHESYKIAESSGIDYSEIGREGQGDGEGDGCERDSKADVLSEGRSEGEAPLNICADERMPPRGELSGQESNGDMESPWGGMYTDVPPTEPYDLIARESWVSDGSDVDVTEKRETLEEELQFPKSLGRVYTCALCGVKAHSLKELRAHKALVHAHVHAHVHAHAHAHVGHPSHVAHVAPATPSPPLKLTHAPHTYSRLVTDRKIKKEEKSHDSVTLTNNILGMDSKEPITSTILQVYDTLEEAKPKIETLIKQETKRRRKDYVCPTCKVDQGTDAEFNAHLKIHPLECLTCGKCFFRRANLALHMKTHLGIKNYKCDVCEKRFITRQKLMEHHNIHTGRQPIKCTMCDDTFRRYSNMVQHRDRHHLAKRAKVRDYVCACGAVFHSRAKLAWHRETHDERPKACPYCSDKFVHAASLTRHVRRTHNAHFRKLERADEPPANVPCPVCKQLYLRANLRAHVLTHSGARPHACVVCGKAFSTKWNLKLHRWTHVSRSAKPFRCALCAGAFVRLPEYTAHMNAHRAVRPYTCNHCGRQFIRKYNCQRHVREHEQAKRFVCKVPDCGKSFHRTYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVKIHHAREPVATEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00281692;
90% Identity
-
80% Identity
-