Temo010112.1
Basic Information
- Insect
- Trisateles emortualis
- Gene Symbol
- -
- Assembly
- GCA_947095525.1
- Location
- OX352739.1:18062234-18071299[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.25 18 6.5 5.1 3 23 39 60 38 61 0.93 2 16 4.2 3.1e+02 2.6 1.6 1 19 69 87 69 92 0.94 3 16 0.0001 0.0075 17.1 0.7 1 23 98 121 98 121 0.92 4 16 6e-05 0.0045 17.9 2.7 1 23 123 145 123 145 0.98 5 16 3.9 2.9e+02 2.7 1.4 1 20 154 173 154 176 0.72 6 16 0.0034 0.25 12.4 0.1 1 23 181 203 181 203 0.97 7 16 0.14 10 7.2 0.6 3 23 231 252 230 252 0.90 8 16 0.28 20 6.3 5.7 1 19 259 277 259 281 0.91 9 16 0.0012 0.089 13.8 0.1 1 23 287 310 287 310 0.92 10 16 0.00073 0.054 14.4 0.4 1 23 320 343 320 343 0.97 11 16 0.0084 0.62 11.1 0.1 1 23 348 372 348 372 0.96 12 16 0.33 24 6.1 2.0 3 23 380 400 380 400 0.95 13 16 0.0026 0.2 12.7 1.8 1 20 405 424 405 427 0.93 14 16 0.0066 0.49 11.4 2.1 1 23 433 455 433 455 0.95 15 16 1e-06 7.5e-05 23.4 1.5 1 23 461 483 461 483 0.98 16 16 0.00011 0.0079 17.1 0.3 1 23 489 512 489 512 0.98
Sequence Information
- Coding Sequence
- ATGGAGTCACCCATTCAATTCGACTTAGAGGCCAGCGTTGACTGGCTCGAGCTAGAGCAGCTGGTCGCAGGCTGCACAAAGCCGACCGCTATCGAATTGGTCGGCGGCATTCTGTGCAACATATGCCATTCAACGTTTAATAACAAGAAATTATTCGACCGTCACTACACTGAGCAGCACCATATGACTTCTTCAGAAATAATGTACACTTGTGTAGTGTGTCGCAGAGAGATTGCCCGTTATCCGAATTTCCGCAACCACTGCTACCAGGTGCATGTTGCTAAGGACAGATTCAAATGTGAATATTGCGATAAACAGTTTTCAAAAAAATCCATACTGACCAGCCACATTGATGCTGTGCATATCTTCAGGTGTGCATTATGTCAAAAAGAGTTTTCATCCAAAAATGAACTGCATACACACCAAAACATCCACAAAAGAGAGAAAGAAAAGCCCCCATACCCATGTCACCAATGCTCAAAGACCATAGAGAGTGTCGATATGTGTGAAATGCACATTGATGAGCATTGCAAGATCTTATACCCGTGCCCTATTTGCGACGAGATAACTAGCAGCAAAATGGAAACAGCAAAGCATCTCACTAAACATTTTGATGAATTACCAACTAATGTGATGGTTGACACAGAAATCAGTGCAGACTGTTCTGTAGACCTGCTTGGAGGAGTGCTCTGCTCTTACTGTGATGAACTATTCAAGAATAGAACAGATTTTGATCTACACTTCATCAATGAACACTCAGAAAAAGATATTGCTTACTCATGCAATATATGTGGGAAGCAGTATAGTAAATACAATATGTTTGCCAATCATTGCCACTTTCATGTCTCCAAAAATAGGTTTGAATGTGTAGAATGCGGTAAGCTGTTTCCACGCCTGTCACTGCTGGTGCTTCACACAGAAGCGTTCCACACCACAGGCACGGCGGACAACAAGCCATTCAGCTGCATGGAATGTGGACATGCATTCGGTTCTGCTCAGCGACTCAAAGAACATCTGCGCGTTGTGCACACCCTCAGCGCTTTCGCATGCCCAGAAAATGGATGTAATATGACATTGGAGTCCCTCAGAGATCTGATCCTGCATCAACGCAAACACAAGGAATCGCGTGACAACTGGTGTAGGCAGTGTGGGCTGCAGTTCACCACGCTATCGTCCTGCCAGGCGCATCTCGACCTCCACCGCAAGATCTACTACACTTGCCCCGTCTGCCATAAGAAATACAGGGAGAAGCACTTGATTATTAAACACATCCCCATACATTTTGAGTCAGTCCTCCACATCTGCAAGGTCTGTGGGAAGGTGTTCCATGCCCGCAGCCGGCTTGTTGAGCATTCCAAAATTCACTCTGAAATAAGAAATCATAAATGCAGCTATTGTGGCAAGGGATTCATGAGACCCTACCAACTTGAGCAGCACCTTAACATTCATACTGGTACAAGGCCCTATAAGTGTGTGGTCTGCGCGAAAACCTTCGCCAGCTACCCTAATTGGATGAAGCATTTGCGGAAAGTACACAAAATTGATAAGAATAAAATGAAAAAGCTCGTCGATGAAACAAAAACGAAAAAAAATAAAAATGTTCCTCCTGTTATAAATATTGATAAGAGTGATGGTGAAGTAAAAAGCGAATCAGGAATCGAGTCCACGAGTCCTGATATGTCTTTAGATACGTACGTGTTTGGCGAGTCTGATGACAGCACTATGGACAGCATTGACCCGGCGGTCATTGAGAAAGATTGGTGCACCTTGAATGAGAACTCATTTGTTGACAATAGTCTACAGTATACAGAAATGCTGCCAGTCAACAATACTGCATTTGAAACTGAGAGACCAACTATATTCGAGATCTCGCCAGCATCTGAGAGCGCGGTACTGAGGGAGTACGGGCCAGAGTTCAACGTGGACGACGGCATCCACCTGGACGACCACTACCTGCCGCACATCGACCCGCTGCTCACCATCAAGCAGTACCCCGCGCAGGCCGCGGTGTCCCACCGGCTGTTCGCCAGCACCTGCCAGTACGACACGCCCGCGGCCGCCGCGGCCCCGCAGACCGCGTGGGAGCCCCTCATCACCAAGGTGTACCACACTTACGAACCCGAAGACATGAACAGACTCGCCATCATGAACACAGATATATACTAA
- Protein Sequence
- MESPIQFDLEASVDWLELEQLVAGCTKPTAIELVGGILCNICHSTFNNKKLFDRHYTEQHHMTSSEIMYTCVVCRREIARYPNFRNHCYQVHVAKDRFKCEYCDKQFSKKSILTSHIDAVHIFRCALCQKEFSSKNELHTHQNIHKREKEKPPYPCHQCSKTIESVDMCEMHIDEHCKILYPCPICDEITSSKMETAKHLTKHFDELPTNVMVDTEISADCSVDLLGGVLCSYCDELFKNRTDFDLHFINEHSEKDIAYSCNICGKQYSKYNMFANHCHFHVSKNRFECVECGKLFPRLSLLVLHTEAFHTTGTADNKPFSCMECGHAFGSAQRLKEHLRVVHTLSAFACPENGCNMTLESLRDLILHQRKHKESRDNWCRQCGLQFTTLSSCQAHLDLHRKIYYTCPVCHKKYREKHLIIKHIPIHFESVLHICKVCGKVFHARSRLVEHSKIHSEIRNHKCSYCGKGFMRPYQLEQHLNIHTGTRPYKCVVCAKTFASYPNWMKHLRKVHKIDKNKMKKLVDETKTKKNKNVPPVINIDKSDGEVKSESGIESTSPDMSLDTYVFGESDDSTMDSIDPAVIEKDWCTLNENSFVDNSLQYTEMLPVNNTAFETERPTIFEISPASESAVLREYGPEFNVDDGIHLDDHYLPHIDPLLTIKQYPAQAAVSHRLFASTCQYDTPAAAAAPQTAWEPLITKVYHTYEPEDMNRLAIMNTDIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00869929;
- 90% Identity
- -
- 80% Identity
- -