Temo012389.1
Basic Information
- Insect
- Trisateles emortualis
- Gene Symbol
- -
- Assembly
- GCA_947095525.1
- Location
- OX352736.1:5672672-5678363[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0044 0.33 12.0 0.2 1 23 63 87 63 87 0.97 2 9 6e-06 0.00045 21.0 1.0 4 23 96 118 93 118 0.88 3 9 1.9e-06 0.00014 22.6 2.3 1 23 127 150 127 150 0.98 4 9 1.2e-05 0.00086 20.1 2.7 1 23 154 176 154 176 0.97 5 9 0.00029 0.021 15.7 2.6 1 23 182 204 182 204 0.98 6 9 3e-05 0.0022 18.8 5.8 1 23 207 230 207 230 0.98 7 9 4.6e-05 0.0034 18.2 4.1 1 23 235 257 235 257 0.97 8 9 5.1e-07 3.8e-05 24.4 0.4 1 23 264 289 264 292 0.96 9 9 0.25 18 6.5 3.0 1 23 294 316 294 316 0.96
Sequence Information
- Coding Sequence
- ATGGAAAAAAGGGAGCTTGAATTAGATAAGAAAGTAGAAACTACGGCCGACAAAGAAATAAAACATTCAAACAAGGACATGATGCAGGAGCTTGAAATGGATAAAACAGTAAAATCTACGGCCGAGGAAGAAATGAAACATATAAATATTGAGAAAATGATGGAGCTTCTCCAAACGAAGAAAGTTTACCAATGCACTTATCCGGGGTGCACGACTTATTTCGATAGACCCTACAGATTGGCACAGCACATATTAGCGCATAACAATATAAGACCTTACCTATGCCTACAACCAAATTGCGGCAAAGCATATACTAGTAAAAGTCATTTGGATCGTCACTTGAGAACTGTACACTTGCCTCAAGAAAAAGATACGGTTTACAGTTGCTCAAGCTGCTTCAGAACATTTGCAAATCGACAAAATCTCAAAAGACACATGAACACAGTACATAAAATGGAATTTTCATGTGAAATTTGTGACAAACAGTTCAAAAAGAAGAATCAGCTCAGCACTCACATGTACCAACATACTGGCATTAAAGCATTCAGCTGTGAGGCATGTCCGGAAACATTTGTTAGCCTATATCATAAAAAGAGGCATATGAGATACCATAAAAAATACACATGTCATGAATGTAATACTGAATTCAATCACTGGTCTAAATATCAAAAACATTTAAAATCAGATCATCAAAAAGATGAGTTTATATGTAATGAATGTGGAAGATCTTTTAAACAACGTTGTCACATAGTTCGACATGTTAAAATCCACGGCGAGTTTAGTCGAACTTTTATGTGTCCTTATGAAAACTGTGGAAGGTCTTACTCAAGGAATAGCAATTTAAAACAACACATATTAATAAAACATATGAATATGCTACATGAATGTATGATTTGTCATTCACAACTATCAACTAAAGCTAAATTAAACTATCATGTACAACTGCATTACAATTCTGAGATGGATGGACGACCACCTAGATTGAACACGGACAGGAAACCAAGAAAAGATGAAGGAACTTTTAAAACTTCCACGGCCCTTAAACTGGCGGGATTGACTAAATCACCTTTTGAATCATCAACCTTATCTGAAGTACACAAGGAGTTACATTCAACATTGTCTGGATTGACTGACGTGCCTGATAATTTACAGGCCACTTTGTCAGACCTGGCCAAAGTGTCTCAAGAGAAGTATCCAGAATCAAGCTCGCCACCACCTCTAAATTTGTCAGTAAAAACTGAATATATAGAAGTAGAAGTTGACATTCCTTATGATATATAA
- Protein Sequence
- MEKRELELDKKVETTADKEIKHSNKDMMQELEMDKTVKSTAEEEMKHINIEKMMELLQTKKVYQCTYPGCTTYFDRPYRLAQHILAHNNIRPYLCLQPNCGKAYTSKSHLDRHLRTVHLPQEKDTVYSCSSCFRTFANRQNLKRHMNTVHKMEFSCEICDKQFKKKNQLSTHMYQHTGIKAFSCEACPETFVSLYHKKRHMRYHKKYTCHECNTEFNHWSKYQKHLKSDHQKDEFICNECGRSFKQRCHIVRHVKIHGEFSRTFMCPYENCGRSYSRNSNLKQHILIKHMNMLHECMICHSQLSTKAKLNYHVQLHYNSEMDGRPPRLNTDRKPRKDEGTFKTSTALKLAGLTKSPFESSTLSEVHKELHSTLSGLTDVPDNLQATLSDLAKVSQEKYPESSSPPPLNLSVKTEYIEVEVDIPYDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00795078;
- 90% Identity
- -
- 80% Identity
- -