Tper009711.1
Basic Information
- Insect
- Trionymus perrisii
- Gene Symbol
- -
- Assembly
- GCA_900050545.1
- Location
- FIZV01022565.1:5448-8865[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.013 1.4 10.1 1.6 2 20 103 121 102 125 0.88 2 15 3.5 3.6e+02 2.5 0.4 1 20 133 152 133 153 0.91 3 15 0.52 53 5.1 0.4 9 23 178 192 167 192 0.84 4 15 0.012 1.3 10.2 3.0 1 22 301 322 301 325 0.90 5 15 0.017 1.7 9.8 1.1 2 23 328 349 327 349 0.94 6 15 0.0011 0.11 13.5 1.3 2 23 385 406 384 406 0.95 7 15 8.5e-05 0.0087 17.1 1.0 1 23 412 434 412 434 0.97 8 15 1.3e-06 0.00013 22.8 0.3 1 23 440 462 440 462 0.98 9 15 0.12 12 7.2 0.6 1 20 474 493 474 497 0.81 10 15 0.018 1.8 9.8 3.6 1 23 513 535 513 535 0.99 11 15 0.044 4.4 8.5 1.0 1 23 544 566 544 566 0.97 12 15 0.14 14 7.0 5.9 1 22 593 614 593 617 0.91 13 15 0.00052 0.053 14.6 1.7 2 23 691 712 690 712 0.96 14 15 6.3e-07 6.4e-05 23.8 2.1 1 23 721 743 721 744 0.96 15 15 0.007 0.71 11.0 0.1 2 20 749 767 748 769 0.91
Sequence Information
- Coding Sequence
- atggaAGCTGTTAATAAGAATTCGGCAACCAACAAGGCTACAGCCAAATTTCGCGAATTGTGCGCAATATCGAGCTTTCTCAACACCGGCTTAACACCGGAACAATTACATTTATgttgtaaattaattaaaaaaggaGTTAATCCAGAAGCTTTAGCACATTCTGTAAAAACAgATAAGAATGACGAATCTTTCGACGAAGAAACTGTTCGCGGACGTGGTCGTCCTGTCGGTGCTAGAACGGTCGTGAAATCAGTAAACCTTAAAAAGGTTGCCGAAATCGATCAAAAGAAATGCAACCATTTGCAATGCAACATTTGCAATATACAATTCAGCCAGCTCGTTAATTTTGCCAAccactgtttaaaaaatcacttcaattCGTCGTATCACCAATTCGATTGCGGTTTTTGTTATGAGATCCATACTTCGAAAGAGAGCCTTTTGAAGCATATCCTTTGCCAGTCCGGTGAATTAAAAGATAAATGTAACGTTGCTATCGTATGCCCGCTTTGTGTCCTCCCACAGGGTAGCTTTTCCTCGGAGAGCGAGTTCTGCCATCATTTACAGTACCACGTTGATTCCCAGCAAAGCGGTAATTTTTGCGTGTTACCATCGTGCAAATATTTAGCTTACGATATCGATGATTTGGCTAAGCATATTATTGGTACGCATACCAATCAAATTGTTGCCGATTCCAACTGTTTATTGTGTAAAAATCCTAAATCGTCGGCTTCGTATTTGAACGACCCCAAAGTCGATCCAGATTTGTTGAATTCGTACATCGAAGAGGTAGATGGCGCCGAAGAAACATGTCCGTTATGTTATACAATTCTGAAAGATCTTAATACAGTTCTGGTATCCGCGAATGaggtaatttcttttgaaaaacctaAATATTACCGGTGTACTATCTGCAATTCGGGATTTAGTACACAAACCAAAGTTACCAAACATGCCTGCCGTCAATTGCACACTACAGTGTGTCCGGAATGTAACCGtcaatttaattcgaaaaaaagacTCGTGTTCCATTTGCAATCTCATTTAGATCCTTCGATGACTTTGCGTTGCGACGTATGCATGCTGACTTTCAGCGACGAAACAACCTGCTACGATCACGTACGGTTCAGCCACGAGTCGGAAACGTTGTGCTGTGACACGTGTGGCAAAACATACATAACCAGAATTGGACTGAGTATGCATCAAATGTACCACGACGACGTGCGTAAATTCAAATGCTCGGATTGCGGTAAACGGTTCTTGAATCAGGCTACTCTCAAAGAGCATCGTGTATCGCACCTGAATGTGAAACCATTTCAATGCGATATTTGCGGCAAATCGCTGTCTCGAGCGTCTCGTCTACGGATCCATTTGAAAGTTCACTCGGCCAGGAAtagtaagaattttcaaaaatgttacacATGCAAGATCTGCGGCTTCGTGTCATTCTCTAGCGAACGTCTCCTCGAGCACAATGTAAAAACACACAGCAACAATGAAAACGATTCCAAGACTTCGATTCTGCATAAACTATATCGTTGCGAATTCTGCGACAATTGTTACGAAATGCCTTCGCTTTTGCATCTGCATAGAGAAACCCATGCTCCGGATACGACCGAAAATCCTTTCGTTTGTGGCCTTTGTAACGGATATTTCAAAACGTACTCGCGTCTTGTTACCCATAAACTGTCGCACGGTATCAACACCGAAACTCATATTCTGCAGATCAGCTCGAGTCTCGAAAGCTCCGATAGTTTCATCATTCCGCaatatttttgttgcaaatattGCGATAAATTATACGAGCAATACACCGCTTATAATATCCATATGAAGCATTCCAAGCATTTCGTTCCCAAAGATAAAACTAGTCCGAAACGAAAAGTAGAAGAAGTCGTAAAGATAAATCGTAAATCCAGTCCTAAACCTCGTCCTACTAACGCcgtcgataaaaaatataaacagaGAGAAATTGAATTGGCTgttcaaagtttgaataaaGAAAACATCCCACCGGTTAAAGAATCAAGACCTATCGTACGTGTGCATTCCAACCTGGAGAAATTGATTTGCTGCAAATGCGGTAAAAATTTCGCATCCGAGAAGTTACTTCGTATCCACGAAAACAGACACAATCCTCGTCGCAAGAGAAAGACTTACTCTTGCGAAGATTGTCCCAGGTCTTTTACTAATAAAACGGAGCTGCGAAAACACGAAAACGTCCATCATAAACCTCACCTAATGTGCGAAAATTGCGGTAAGGAATTTCGATACAAAGGTTGGTATTCGTTGCATGTCGATAATAAAGTTTGTTTCCGGACCGACGAAGAAGAGATTccagaagaattgaaaactaatttaCCCTTTACTGATATCATTAATCGTAtattgcttttttaa
- Protein Sequence
- MEAVNKNSATNKATAKFRELCAISSFLNTGLTPEQLHLCCKLIKKGVNPEALAHSVKTDKNDESFDEETVRGRGRPVGARTVVKSVNLKKVAEIDQKKCNHLQCNICNIQFSQLVNFANHCLKNHFNSSYHQFDCGFCYEIHTSKESLLKHILCQSGELKDKCNVAIVCPLCVLPQGSFSSESEFCHHLQYHVDSQQSGNFCVLPSCKYLAYDIDDLAKHIIGTHTNQIVADSNCLLCKNPKSSASYLNDPKVDPDLLNSYIEEVDGAEETCPLCYTILKDLNTVLVSANEVISFEKPKYYRCTICNSGFSTQTKVTKHACRQLHTTVCPECNRQFNSKKRLVFHLQSHLDPSMTLRCDVCMLTFSDETTCYDHVRFSHESETLCCDTCGKTYITRIGLSMHQMYHDDVRKFKCSDCGKRFLNQATLKEHRVSHLNVKPFQCDICGKSLSRASRLRIHLKVHSARNSKNFQKCYTCKICGFVSFSSERLLEHNVKTHSNNENDSKTSILHKLYRCEFCDNCYEMPSLLHLHRETHAPDTTENPFVCGLCNGYFKTYSRLVTHKLSHGINTETHILQISSSLESSDSFIIPQYFCCKYCDKLYEQYTAYNIHMKHSKHFVPKDKTSPKRKVEEVVKINRKSSPKPRPTNAVDKKYKQREIELAVQSLNKENIPPVKESRPIVRVHSNLEKLICCKCGKNFASEKLLRIHENRHNPRRKRKTYSCEDCPRSFTNKTELRKHENVHHKPHLMCENCGKEFRYKGWYSLHVDNKVCFRTDEEEIPEELKTNLPFTDIINRILLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01263890;
- 90% Identity
- iTF_01263890;
- 80% Identity
- -