Basic Information

Insect: Trionymus perrisii
Gene Symbol: -
Assembly: GCA_900050545.1
Location: FIZV01063788.1:77-2166[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.014 1.4 10.1 4.3 1 23 349 371 349 371 0.98

2 9 5.9e-06 0.0006 20.7 1.6 1 23 377 400 377 400 0.98

3 9 0.00076 0.078 14.1 2.3 1 23 405 428 405 428 0.98

4 9 1 1e+02 4.3 0.2 1 23 432 455 432 455 0.90

5 9 8e-06 0.00082 20.3 0.1 1 23 461 484 461 484 0.97

6 9 0.9 92 4.4 0.5 2 20 490 508 489 510 0.90

7 9 0.00011 0.011 16.7 0.4 1 23 518 540 518 540 0.98

8 9 0.00023 0.023 15.7 1.6 1 23 546 568 546 568 0.97

9 9 9.2e-08 9.4e-06 26.4 2.6 1 23 573 595 573 595 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.014	1.4	10.1	4.3	1	23	349	371	349	371	0.98
2	9	5.9e-06	0.0006	20.7	1.6	1	23	377	400	377	400	0.98
3	9	0.00076	0.078	14.1	2.3	1	23	405	428	405	428	0.98
4	9	1	1e+02	4.3	0.2	1	23	432	455	432	455	0.90
5	9	8e-06	0.00082	20.3	0.1	1	23	461	484	461	484	0.97
6	9	0.9	92	4.4	0.5	2	20	490	508	489	510	0.90
7	9	0.00011	0.011	16.7	0.4	1	23	518	540	518	540	0.98
8	9	0.00023	0.023	15.7	1.6	1	23	546	568	546	568	0.97
9	9	9.2e-08	9.4e-06	26.4	2.6	1	23	573	595	573	595	0.99

Sequence Information

Coding Sequence: ATGTTAAACGAACTTTGTCGTTTGTGTGGTAACAAGAGTAACTCGACTTTGGATATTTTTAGCGAAGCTGGATCTCAAGAGAAGCTCGAGCTCAAGATTAAACAAGTCGTTCGCTTAAGTATTTTGCAGGAAGATCCTTTGCCCAGCATCGTTTGTACTTTATGTGTCAAACATTTGGAGAGTGCTTCTGATTTTATCGATCGTTGCCATCAGACTCAAAAGTATTTGAGCCAATTGTATCATAATAATATATCTTTAGACAATATTATTATACCTCCTTCGTGCGAATCAAACAACACAGAAAATATAACGACAGATACATCAGATAATGCAATTGATACCGAAAACGATTCTGGTCCATCAACATCTATTTCATTTAGTAAtctaaaatctgaaaaaaataattcaatttatacTTCGACCAAAAATCACTTCGGCGTGAGAATTTCGAAAGATAACAACAGCTACGCAGatgcatttcaaaattacatcacCGAACTGTCTAACACCTCGAGTATCAAATCACAAAATAATTCTAGTTTATCGATGGAACTAACTCCATCGATATGCGAGGATAAATCATCAAATGCTAAGAAGATAATTATCAGCGAAGTAACATCcttagctaaaaatttaaacaaaagtaATTCTGATAACGCtgattcacaaatttttcgaatcaagCCGGAAACTACAAGTTCACCGAATGATCGAAGTCAATTGAAAAGGAAATGTACCTTGCAAGTAACTCCAATGAACAACCTAAACGATTCTAGTGATGAAGATAATCGCGAACGAGACGAAAATAGCGATGATAGTTTTGTTCTTGATAGCATTGAAGAAGAAGACTACGATACTTTTAGTCGAAATGCGAAAAATAGTagtcaaaaatcaaagtcACTTCCAacgtcgaataaaaaaaattctcacaagaAAGATGTTTCGAAAAACTCCACCTTGGATCAGTCAATATCATCAGAAGGATCCAAACAGGATGCCCAAgAAAACAACTCAAACAGGAGAGATTCCAAAGGCAAAAAACGCTTCCGGTGTTGCTCCTGTAGAAAAACATTCTCACAAGAACTGACTTACCAAGAGCATCTAAACGTTCACACCGGAAACCGTCCTTTCTCTTGTAAACTTTGCACAGCATCATTTCGAAGACGACAAGAGCTGAATCAGCATTTACGAACCATTCATTcggaaaaacaattcaaatgcCCGTCGTGCGATCATGTAGCCAAACACAAAGGTAAACTAACCGAACACATAAAAAGCGTACACGATAAACCATTCGCATGCGATATGTGCGACTACAGAACTGGCgaaaaaggtaaaatattGCAGCATATTGCCAACAAACATACTGCTAATTTATCATTCGTTTGTGAGATCTGCGGCAATGgattcaaaacgaaaattgcTTTGCAAGTTCATATTAGAAATATTCACTTCCCGGAACCGAAAGTATGCCAAACTTGTGGCACAGTTTGCCCTTCGTTGGCTCGATACAGTTCTCATATATTCCGATGTGGTAAAGAGAAGAAACGATATGCGTGTGAAAAATGCGGGCAAACGTATGTAAATAAGGAAATTCTCAGAGATCATATGAATAAGCACTTGAATGTAAAACCTTACAAGTGTGACGTTTGtggcaaagaatttttccagagGAGTCGTTTGGATACTCATAAATACGTACACCGAGGAGCTAATTATCAATGTGAAATTTGTAATCAGTCTTTCAATAGAAAAGATAACATGAAAAATCATATGAAAagacatttctataaatcTATGAGGTATGATAATATGATTGTGACTGctgtttga
Protein Sequence: MLNELCRLCGNKSNSTLDIFSEAGSQEKLELKIKQVVRLSILQEDPLPSIVCTLCVKHLESASDFIDRCHQTQKYLSQLYHNNISLDNIIIPPSCESNNTENITTDTSDNAIDTENDSGPSTSISFSNLKSEKNNSIYTSTKNHFGVRISKDNNSYADAFQNYITELSNTSSIKSQNNSSLSMELTPSICEDKSSNAKKIIISEVTSLAKNLNKSNSDNADSQIFRIKPETTSSPNDRSQLKRKCTLQVTPMNNLNDSSDEDNRERDENSDDSFVLDSIEEEDYDTFSRNAKNSSQKSKSLPTSNKKNSHKKDVSKNSTLDQSISSEGSKQDAQENNSNRRDSKGKKRFRCCSCRKTFSQELTYQEHLNVHTGNRPFSCKLCTASFRRRQELNQHLRTIHSEKQFKCPSCDHVAKHKGKLTEHIKSVHDKPFACDMCDYRTGEKGKILQHIANKHTANLSFVCEICGNGFKTKIALQVHIRNIHFPEPKVCQTCGTVCPSLARYSSHIFRCGKEKKRYACEKCGQTYVNKEILRDHMNKHLNVKPYKCDVCGKEFFQRSRLDTHKYVHRGANYQCEICNQSFNRKDNMKNHMKRHFYKSMRYDNMIVTAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00194659;
90% Identity: -
80% Identity: -