Tper004250.1
Basic Information
- Insect
- Trionymus perrisii
- Gene Symbol
- -
- Assembly
- GCA_900050545.1
- Location
- FIZV01043514.1:1-1903[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00021 0.021 15.8 1.8 1 23 109 131 109 131 0.99 2 12 0.00057 0.058 14.5 6.3 3 23 139 160 137 160 0.95 3 12 0.0001 0.01 16.8 1.9 1 23 166 188 166 188 0.95 4 12 1.5e-05 0.0016 19.4 5.1 1 23 194 216 194 216 0.98 5 12 0.69 71 4.8 5.4 1 23 222 244 222 244 0.92 6 12 9.7e-05 0.0099 16.9 1.6 1 23 249 271 249 271 0.98 7 12 0.00096 0.098 13.7 2.0 1 22 288 309 288 310 0.91 8 12 0.016 1.6 9.9 6.9 1 23 316 338 316 338 0.97 9 12 5.4e-05 0.0055 17.7 1.5 1 20 344 363 344 366 0.95 10 12 0.092 9.4 7.5 5.7 1 23 372 394 372 394 0.98 11 12 0.00044 0.045 14.8 3.3 1 23 400 423 400 423 0.93 12 12 2.2e-05 0.0022 18.9 0.9 2 23 429 450 428 450 0.97
Sequence Information
- Coding Sequence
- aataaaagaaagaaaacaaaacctAAATGTATCAAACAGTGTAAATCTGACGCTGGCAACGAAGGCGACAATAACCAGAGCGATGTCGATTCATCGttagaaaataaagaaaacgaGAATTACGAAACGGGAGATACAGTTCTGGAAGACTTAGACGATACTGTAATGAGCCCAGAAGCCACAGAAGATGTTCCAGTTGTCGAGAAAaaaagaaaatacacaAAATCTGCTAAAGGtacgaaatctaaaaaatctacCAAACCTACCGCACGTAAATCGCGTTCTAAAACGAAGAAGGAACCTGTATCGAAAACCGACCGACCATACAAATGTAAAATATGCGACGCCAGGTTCGCCATAAAAAAGTGTTTGGTTAGTCATCAAATCACCCACACCGAAGAAAAACTGCACCTGTGTTCATACTGCAGTGCGAGTTACAAACATAggcataatttattaaaacataTTCGAGTAAGCCACACTGACGAGAAACGTTTTCTGTGCAATTATTGCGGCGCTAAGTTCGCCCTGAAAGATACGCTGGAACGTCACACACATACTCACACCAACGAACGTCCATTCAAGTGCGAGTACTGCAAAGCAACGTTTAGTCAAAAATACCACATAAGGATGCATATGCGTAATCACATGGGCGATAATCCGTACCTTTGTACATTTTGTAACGCCACTTTTACCAATCATACCTCCCTATCGTGTCATCTTCTGCAGCACACAGGTGAAAGATTCGAATGCCCTGTTTGCCATTTGGAATTCAAATCAAGGCAGAGTCTCGGACAACACAGAAGGTTACATTCTCCGGTTCAAAATAAACGTTTCAAGAGTCAAACTATCGACAAAAGGTACCAATGTGATACTTGCCAACTGATGTATAGGTCGAGAAGTACATTAAAAGCTCATTGTATCGTGCACACCGACGAAAAACCTCACCAATGTTACATATGCGGTATGCAGTTCAAATACAGACGTAATTTGAAATGCCACATCTTCACTCATACCGGAGAAAGACCCTATAAATGTGAAATCTGCGGAACCGGTTTCAGACAAAGGGTCAGTTTGAAAACGCACGCTTTGTGTCACACAAACGAACGACCATTCAAATGCGAATTTTGCGAGGCTacttttaaatgtaaaaaatcccTCAATGAGCATCTGCACATTCACGATGGCGCCGGCCAATTCAAATGTGACCAATGCGACACCACTTTTAAACTTAAACGATATTTGAGGCAGCATGTGTATTATTCACATAGCAAACCTCCGTCTGTTTGTACTGTTTGTAAAGCTGTTTTCAAATACGAAAGATCTCTTAAACGTCACATGCTTAAACATTCCAATCAAGTTGAAGTCAACAATACGGACAATATTACGTATAATTTTCAGTCGTCAGTATTGCCATAA
- Protein Sequence
- NKRKKTKPKCIKQCKSDAGNEGDNNQSDVDSSLENKENENYETGDTVLEDLDDTVMSPEATEDVPVVEKKRKYTKSAKGTKSKKSTKPTARKSRSKTKKEPVSKTDRPYKCKICDARFAIKKCLVSHQITHTEEKLHLCSYCSASYKHRHNLLKHIRVSHTDEKRFLCNYCGAKFALKDTLERHTHTHTNERPFKCEYCKATFSQKYHIRMHMRNHMGDNPYLCTFCNATFTNHTSLSCHLLQHTGERFECPVCHLEFKSRQSLGQHRRLHSPVQNKRFKSQTIDKRYQCDTCQLMYRSRSTLKAHCIVHTDEKPHQCYICGMQFKYRRNLKCHIFTHTGERPYKCEICGTGFRQRVSLKTHALCHTNERPFKCEFCEATFKCKKSLNEHLHIHDGAGQFKCDQCDTTFKLKRYLRQHVYYSHSKPPSVCTVCKAVFKYERSLKRHMLKHSNQVEVNNTDNITYNFQSSVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -