Tper011310.1
Basic Information
- Insect
- Trionymus perrisii
- Gene Symbol
- -
- Assembly
- GCA_900050545.1
- Location
- FIZV01008754.1:2594-3859[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.013 1.3 10.2 0.3 1 23 77 100 77 100 0.97 2 9 1.2e-05 0.0012 19.8 1.7 1 23 132 155 132 155 0.96 3 9 0.0035 0.36 12.0 0.4 2 23 164 186 164 186 0.97 4 9 2.7e-07 2.8e-05 24.9 2.2 1 23 248 271 248 271 0.97 5 9 0.0012 0.13 13.4 1.3 1 23 277 299 277 299 0.96 6 9 7.6e-06 0.00077 20.4 0.4 1 23 305 327 305 327 0.97 7 9 2.7e-06 0.00027 21.8 3.9 1 23 333 355 333 355 0.98 8 9 2.1e-06 0.00022 22.1 1.1 3 23 363 383 361 383 0.97 9 9 0.00033 0.034 15.2 3.7 1 23 389 412 389 412 0.94
Sequence Information
- Coding Sequence
- TTGAGTGACGGTTCGAAGAGTAAGCCTGAGGCAGTAACTAAAGCACATGACGAGGTAGTAGTATTATTTTCCGAGATTCAAGACTTTTCTTTGTTGAAAGGATTCATATTGAATGATAGAACCTCTAAACACCACTGCTCCACTTGTTTCAAAGCGCACGTTACTAAAGAAGAACTCCTCGACCATATATGCGCTAAACATGACTCAAATATTAACCGAAGTGAGATGTACGAGTGTGATATGTGCGCTGAACTATTTATTCAGAATAGTTATCGTAATTCTCATCGACTCACTGCGCACAATATAAGCACTCCTTTGAGTGCAGATTTCAAAGTCGTTAGAATCAACAATCAAACAACTAGTACTTTGAAACTTGAAGAAGATGAGAATTCGTTTATTTGCGAATATtgtgatttaaatttcaatcggAAGGGTAATCTTAAACTACACAAAATGCGTAAGCATGgtgtaatttatcaaaacataAGACGCTGTGGTATCTGTTCGATGGTCTTCCTGAACAAAAGAGCTTTAAGACTGCACCTCAAAACTGTCCATGCTAGATTGCTCGATGAAAGTGACAACACCAAGATTGCCATAAGCGAAGATTACCTGCAGTTTTTATCGAAACGTATCGTTTACGTGGGTGACATTCGCTACTTCCAATGCGAAGAGTGTCAATATAAGTGTCGCAGATTACATCGATTCATGTGTCATGGAAATCGTCACCtaaatatcaatttcatttGTGCCTATTGcgataaatcattttcttacaAAGGGTTACTCAAAAGACATATCTGTACTGTTcacttaggtattaaaaagtttgattgTAGCGTTTGTGGAAAGTTGTTCGGTGAACGGAAACACATGCAAGAACATATGACTCTGCATCAGGACGTGTATAGTTATATTTGCGAAGTATGTGGTAAACAGTTTAAGCAAAGACAATCGTTGGATGCGCATAAGCAGGTTCACAGAGGTGGGAACTCCTTCTCTTGCGAGTACTGCGATAAAACATTCAACTTTCGAAATAGACTAAATAATCATATGAGGAAGCATACAGGTGAAAATTTGAGCATTTGTCAATTATGCGAGAAGAAGTTTACATCCAGTACGAACCTGAAAGTGCATATGTTATCGCATTCGGATGTAAAAGCATTCCAGTGTTCTGTGTGTAGTAAACGTTTAAAGACAAATCGATCACTCAAACAACACATGGTGCTGTGTCATGGTAACATTAAACACGAACCAAACGCATAA
- Protein Sequence
- LSDGSKSKPEAVTKAHDEVVVLFSEIQDFSLLKGFILNDRTSKHHCSTCFKAHVTKEELLDHICAKHDSNINRSEMYECDMCAELFIQNSYRNSHRLTAHNISTPLSADFKVVRINNQTTSTLKLEEDENSFICEYCDLNFNRKGNLKLHKMRKHGVIYQNIRRCGICSMVFLNKRALRLHLKTVHARLLDESDNTKIAISEDYLQFLSKRIVYVGDIRYFQCEECQYKCRRLHRFMCHGNRHLNINFICAYCDKSFSYKGLLKRHICTVHLGIKKFDCSVCGKLFGERKHMQEHMTLHQDVYSYICEVCGKQFKQRQSLDAHKQVHRGGNSFSCEYCDKTFNFRNRLNNHMRKHTGENLSICQLCEKKFTSSTNLKVHMLSHSDVKAFQCSVCSKRLKTNRSLKQHMVLCHGNIKHEPNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -