Tper001459.1
Basic Information
- Insect
- Trionymus perrisii
- Gene Symbol
- -
- Assembly
- GCA_900050545.1
- Location
- FIZV01046399.1:1-3022[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00019 0.019 16.0 0.1 2 23 79 101 78 101 0.96 2 15 0.0047 0.48 11.6 10.8 2 23 183 205 182 205 0.96 3 15 0.00013 0.013 16.5 3.2 2 23 222 243 221 243 0.95 4 15 0.0002 0.02 15.9 0.3 1 23 265 288 265 288 0.94 5 15 0.099 10 7.4 0.1 2 19 389 406 388 408 0.94 6 15 5.4e-06 0.00055 20.8 3.3 1 23 421 444 421 444 0.98 7 15 0.045 4.6 8.5 0.1 2 23 464 486 463 486 0.96 8 15 0.11 11 7.3 0.7 1 23 494 517 494 517 0.87 9 15 2 2.1e+02 3.3 2.0 1 23 543 565 543 565 0.94 10 15 1e-05 0.001 20.0 2.0 1 23 571 594 571 594 0.97 11 15 0.018 1.9 9.7 5.7 1 23 600 622 600 622 0.98 12 15 0.00088 0.09 13.9 0.7 1 23 628 650 628 650 0.96 13 15 5.5e-06 0.00056 20.8 2.1 1 23 656 678 656 678 0.97 14 15 0.00044 0.045 14.8 3.0 1 23 684 707 684 707 0.97 15 15 0.00063 0.065 14.3 4.0 1 23 713 735 713 735 0.98
Sequence Information
- Coding Sequence
- CGCATCGCACAAGGTACCAGGAAACGAGGTTCACTTACTGCTAAAAAGAGACCATCGTCAGCCGCTGGCAGTACAGTTGGCGGAAATGGTAGCGAAGAGCGTGCCAAAATggtgaaaagcaaaaaattacgaactcTGATGATGGAATCGCCTCCTGTACTACCGTCGTCTGCAGAGTCAGAAACATCACCTCCGCTTAAAAAGCTACGTTCTAatgttaaaatcaaaaaatcaaaatgtaacatttgcGGTGTCTCTTTTACCGAAGTGGACGATTTAAAATGGCATAAAGATACGATCCATAAGTTATCCGATCATTCATCCGGTCTTGTAAGCGCAGTTCGTAAAAGTTCACGAATCCAAGCTAGAGTGATTGATAAAGCTAAAGTTGCTCAGCATGTCGAGTCTATTGAACTTGATTCGGGTAAGAAACTTGTAGTGAGTGATGTTATGGTGgttggaaatttgaattcaaggGCAGGGAATGGTCTAGAAAGTTGTGAAAatagcatttcaaaaaagttgaccaACGTGAAATCTGCACTGCATTGTCACCATTGCGAGTATGCCTGTAAAAGTAAGTCCACTATGAGAAAGCACATGCGAACGTATCATCCGAGCAAATTAACGAGTCAAGATGACAAAAGAAATCAGCGAATTCTCTCGTGCGCAATTTGCCTAAAAACTTTTACTCATAAAACAAATCTTCGAAAGCACGTATTCAGTCATAACCCTTCTCATAATGGTGATGGGGAAGAGGTTAATAAGCCCGTATTGAAATGGAAAAGAGGGTATTGTTGTGATATCTGCGACCGTGCATATGATAACCAAAGGGATTTGCTGGCCCATCGTGACATTGCACACAATACAGAAGTTCCACTCGAATGGATGAGTTTTGTTGGAAGCCACGCCAGGGTGAACCATTGCAAGGTGTGTTGTAAatatttcagagaaaaaagatTTGCAAATCATAAGTGCGAGAGCGATTCCGAAGAAGTTACTAAGAAAATACAACGATTGCTAGATTCCAGTCCGTCCTTCAAATGCGATACTTGTTCATTATGTTTCCATTGGAAGTGGATGTACAGGTCACATCGAGAACGCACTCATCCCACTGTATCACTTATTGACTGGGATGCGTTGGTAAAGACAGAAATAAACATTTATTGCAAGTCTTGCCTGAAAGCATTCGAGGACGAGGACACATTGGCAAAGCATAGCCTCGAGTGTGTCGTCAACCGTGAAAATAAAGTAGAAACATTCGTCTGTGGTTTGTGTGCTCGATCTTTTTGCCGAAAATCCGACCTCCAAAGACATTTAAAAACCAAACATCCGGATCCGGATCTACCAGATACCAATGATGCGGCACCAAGAGCAAAATCAATCATCTCGTGCCCATATTGTGATGTCCAAATGTCATCGCGAAGCAGTATTTTGCAGCATATCAAAGTTGCTCACGACATTGAGACGGATACGCCTTTCATGTGCTTACCTtgtaataaagtttttaaaaggaaagCCACTATGGATATGCATAATCAGATATACCATCCGAAGGAAGAAAACATCGAAGAGactggaaaaattcttaaggAAGCGGAAATCTTGCTCGATGGTGAGACTGCCTACCATTGCAGTATCTGCAATCGTAACGTGCTGAGTTCCACCCGTTTTGTAGCTCACTATAGATTGCACAAACTGGAACGAAAATTCACCTGCGATTTGTGTGGTAAGCAAACTCGTACACAGCACCAGCTCAATACACATATCAAGATTATTCACTTGGATATTCGTAATTTCGAATGcgacatttgtaaaaaaagtttccattcGAAGCAGTCCTGTGAAGAACATAGACGTATTCATACCGGAGAGAGGCCATTTTCATGTGAAATCTGTGGCAAAACGTTCATCGCCATGAATGCCTTATTtacccataaaaaatttcataacgaTTTCTTCGCTCATCCTTGTTCCAtgtgtccaaaaaaattcaaagtacgCAGATCTCTCATTAATCACATACGAACGCATACCGGAGAACGACCCTTTAAATGTGATCTGTGCCCAAAAACGTTTAACAACTCGTCTAGATTTTCGTACCACAAAAAAGTTACTCATTCGGATAATCGACCGTTTACCTGCGATCAGTGTGGAAGCTGTTTTAAAGCGAATAAATTCTTAATGAGACATATGAAATTGCATACCATTCGTACTCATATACAATTCCGTAGACGTAATAATCCGGCTTATTTCGCCAACAATGAAACCAACGCTAAGAAACCAAAAACCTCTTCGTCGAAAAAATCTAACCAAAATACAAAACTCGAAACTGCTACTGATGACCAACCAATTCCTACTAAAATTTACACTGTGGCGCCCTTCTATacctttacaaaaataatgcgCAATGAAGTAGAAAATGTACACATTGATGATGATTTGACCTCTAGAGTTAAAGAAGAAGTATCGACGAATAGTTccagtgaaaataaattctttgtgGAATCTCTTGATGATTTAGGTGATAATGACAATAAACATGATGCGTTTTTATGA
- Protein Sequence
- RIAQGTRKRGSLTAKKRPSSAAGSTVGGNGSEERAKMVKSKKLRTLMMESPPVLPSSAESETSPPLKKLRSNVKIKKSKCNICGVSFTEVDDLKWHKDTIHKLSDHSSGLVSAVRKSSRIQARVIDKAKVAQHVESIELDSGKKLVVSDVMVVGNLNSRAGNGLESCENSISKKLTNVKSALHCHHCEYACKSKSTMRKHMRTYHPSKLTSQDDKRNQRILSCAICLKTFTHKTNLRKHVFSHNPSHNGDGEEVNKPVLKWKRGYCCDICDRAYDNQRDLLAHRDIAHNTEVPLEWMSFVGSHARVNHCKVCCKYFREKRFANHKCESDSEEVTKKIQRLLDSSPSFKCDTCSLCFHWKWMYRSHRERTHPTVSLIDWDALVKTEINIYCKSCLKAFEDEDTLAKHSLECVVNRENKVETFVCGLCARSFCRKSDLQRHLKTKHPDPDLPDTNDAAPRAKSIISCPYCDVQMSSRSSILQHIKVAHDIETDTPFMCLPCNKVFKRKATMDMHNQIYHPKEENIEETGKILKEAEILLDGETAYHCSICNRNVLSSTRFVAHYRLHKLERKFTCDLCGKQTRTQHQLNTHIKIIHLDIRNFECDICKKSFHSKQSCEEHRRIHTGERPFSCEICGKTFIAMNALFTHKKFHNDFFAHPCSMCPKKFKVRRSLINHIRTHTGERPFKCDLCPKTFNNSSRFSYHKKVTHSDNRPFTCDQCGSCFKANKFLMRHMKLHTIRTHIQFRRRNNPAYFANNETNAKKPKTSSSKKSNQNTKLETATDDQPIPTKIYTVAPFYTFTKIMRNEVENVHIDDDLTSRVKEEVSTNSSSENKFFVESLDDLGDNDNKHDAFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -