Tper025126.1
Basic Information
- Insect
- Trionymus perrisii
- Gene Symbol
- -
- Assembly
- GCA_900050545.1
- Location
- FIZV01011956.1:1-3038[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.19 20 6.5 2.9 1 23 152 175 152 175 0.96 2 12 0.34 35 5.7 0.2 1 23 194 217 194 217 0.89 3 12 0.002 0.2 12.7 2.0 1 23 222 244 222 244 0.97 4 12 8e-05 0.0082 17.1 0.1 2 21 251 270 250 271 0.93 5 12 0.00017 0.017 16.1 0.8 1 21 277 297 277 298 0.96 6 12 0.00012 0.012 16.6 0.3 1 20 323 342 323 343 0.97 7 12 0.00026 0.026 15.6 0.8 1 21 351 371 351 372 0.96 8 12 0.0001 0.01 16.8 1.5 3 23 398 418 396 418 0.97 9 12 0.0002 0.02 15.9 0.3 1 20 427 446 427 448 0.95 10 12 9.5e-06 0.00097 20.1 3.0 1 23 455 478 455 478 0.97 11 12 4.8e-06 0.0005 21.0 2.5 1 23 483 505 483 505 0.98 12 12 0.0014 0.14 13.3 1.1 1 20 511 530 511 532 0.93
Sequence Information
- Coding Sequence
- CACGCACCCGGACGCTATGTATTTGTCGATACGAATGTTACACCGAGCGAAAACGAAACCGTAACCATTCCGGACGTACCATCAACGACGCCGTTGTCAGCCAATGAAGGATCCGGCGGCACCACAAAATGCATACAATGCGGTTCCGTGTTCCTGAAAAGTAAAGTAGGAAGTGCAGAAAACCGCGGTACGTGCTACGcgtgtttttcaaatatgaaaaaacgtGCGACGCCGTTTATATCTCCAGTCTATAAGAATTACCTGGTGGTGGACGAGAATAAGCAGAGTTACTTTGTTTGCGACTTGTGTGACTTCTCTTGCGATGCCCTTCCGGACTTATTCGCCCAACACTACAAGATAAAACATCCGGAGgcgaatttgaaacaaaattttgccaaaataaaaaacgatcCGTTGAGTAGATttgctcataaaaaaaatggagttcGGTCGTATCGTTGCGATCGTTGCCAATTGTCTTGTATTTCGCGTAACGTGTTCATTAAACATTACTCATCCGAACATGATGATCGAACGTTACTCACCGATTCGTCGGTAATCCAGGTTAAAGAGAATGAATTTAGTTGCGCTGCTTGTCCAAAAACCTTCGACCAATTCATTGGAgctaaaatacattttaatcgTGTTCATGGTGAGAAAAAGTACCACTGTAATGTGTGCCAGAAGGGTTTTTCGAACGCGCAAAAAGCAAAGGAACACGAAAAAAGTCACCTTGAAATTAAACTCTTGATGTGTGATATTTGCGGGAAGAGATTTGTCAAGAAGGCAAACATGGAGGAacatttgaagaataatttatgCTCCAAGTACAAGTGCACCTCGtgcaatcaaaatttcagtgaTGAAGCTTCTCTAAAGAATCATATCTTGCATTGGGAAAAGTTCAAAGACCCAGGCAACGCCAATAGTCAAAACAGTATTCTCGAAGAAGGATCCCTATTTAAGTACCAATGCGctaaatgtaagaaaaaattcacatctaAACTTGCGCTTAGAATTCATATCGTAGAAGAATTCAATCTAAAGCCTTACAAATGTTTCATTTGCGAACAACAATTCACAACTACGGTGCTGCTGAAGAAACACTTGAATTCGTGTAATAAATCTATACTCGATACAGATAAATGCGACGACATCTCAATTACAAATAAAGATGGTAATTCATTCGGCTGCAAACTGTGTGGAAAaacgtttcgaaaaattggctACCTCAGGCAACATTTTCGACTACATTCGACAACTTCAACTTCGAAATCATACATGTGCCAGTTTTGCGGTAAATCGTTTGGTCTGAAGTCTAATTTCGAGTTACATTTGTCAGCCGAGATGAATCTACGCAAATTCGCTTGTTCGGTTTGTGGAAAGAGATATAATTCCGGTTCTCACTTGACCGCTCATATTAAAACTTGTCATCGTTTGGGAGAATTCAAGTGTAATAAGTGCGATAAGAAGTTCTCCTACGAAAAAGACCTCAAAGAACATGAAAAAGTACATGGTGAAGTCAGGAGGTTCTTTTGCGATAAATGTGGCGGCTTCTTTAAAACTAAAAGGTACCTCAAAGTGCACTGGGAACGGTGcaacatttcgaaaaagtag
- Protein Sequence
- HAPGRYVFVDTNVTPSENETVTIPDVPSTTPLSANEGSGGTTKCIQCGSVFLKSKVGSAENRGTCYACFSNMKKRATPFISPVYKNYLVVDENKQSYFVCDLCDFSCDALPDLFAQHYKIKHPEANLKQNFAKIKNDPLSRFAHKKNGVRSYRCDRCQLSCISRNVFIKHYSSEHDDRTLLTDSSVIQVKENEFSCAACPKTFDQFIGAKIHFNRVHGEKKYHCNVCQKGFSNAQKAKEHEKSHLEIKLLMCDICGKRFVKKANMEEHLKNNLCSKYKCTSCNQNFSDEASLKNHILHWEKFKDPGNANSQNSILEEGSLFKYQCAKCKKKFTSKLALRIHIVEEFNLKPYKCFICEQQFTTTVLLKKHLNSCNKSILDTDKCDDISITNKDGNSFGCKLCGKTFRKIGYLRQHFRLHSTTSTSKSYMCQFCGKSFGLKSNFELHLSAEMNLRKFACSVCGKRYNSGSHLTAHIKTCHRLGEFKCNKCDKKFSYEKDLKEHEKVHGEVRRFFCDKCGGFFKTKRYLKVHWERCNISKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -