Tper009791.1
Basic Information
- Insect
- Trionymus perrisii
- Gene Symbol
- -
- Assembly
- GCA_900050545.1
- Location
- FIZV01055089.1:414-2042[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00021 0.021 15.8 0.7 2 23 34 56 33 56 0.96 2 13 5.3e-06 0.00054 20.9 2.3 2 23 107 129 106 129 0.95 3 13 2.1 2.1e+02 3.3 2.8 3 23 146 165 144 165 0.92 4 13 1e-06 0.0001 23.1 1.1 3 23 173 194 172 194 0.97 5 13 0.00012 0.012 16.6 5.5 1 23 200 223 200 223 0.96 6 13 0.00017 0.017 16.1 3.7 1 23 232 254 232 254 0.98 7 13 0.0035 0.36 12.0 1.3 3 23 285 306 283 306 0.96 8 13 0.31 32 5.8 4.5 1 19 322 340 322 345 0.79 9 13 0.0017 0.17 13.0 0.9 2 20 356 374 355 376 0.93 10 13 0.00053 0.054 14.6 0.5 2 23 382 404 382 404 0.96 11 13 3.8e-05 0.0039 18.2 1.3 1 23 410 433 410 433 0.97 12 13 8.1e-05 0.0082 17.1 0.5 1 23 439 462 439 462 0.97 13 13 0.00027 0.028 15.5 5.3 1 23 468 490 468 490 0.98
Sequence Information
- Coding Sequence
- ATGATCAAAATTGACGTTTTTGGAACCGACAGaccgGCCAGTGGCGACAAAAGTACATCGTTGCCATTACagcaaaaacctaaaaaaaaaaaatccaccgtATGTCGTATCTGTGGTAAACTGTACACAAATCGGAGTACATATTTGAATCACTTGCAGAAAGCCCACGTATCACATCGCACTACCAAATCCACTAAAAAGTCATCTACTCAAcctcaacaacaacaacagtcAGGGCAGGAGCAGCAACAAACAGAAGGAGAATCGCAACCGTCGCAACCAGCTCGACGGAAGTCGACAGCTCCAGCGGCTCCCACTATGTGTTACAAATgtggtaaaatatttaaacatcCTAGTAGTTTGAGGAGccatttaaaatacatacatgCCGCTGATTCGGGAGCTGTAAAGCCACTTGCGAGGCCGTCTAAAATGTGCGATCTTTGCGGTAAATTATGCAaaggtaattatttcaaagcgCATATGTTAAAACATTCAAATCCGGAATCGgccatttgtaaaatttgcggTAAAGTTTTCGCATATTCGGGTACACTCCGAAGTCATATGAAAGTCTGCCATAACGATAATAAACCCTTCAAATGTACGGTATGTTCGACGAGCTTCAAAAGAGCCGATTACTTGAGAACACACTTTCGTCATAAACATCGTGATATCAAAATGGATGGCACGTATAAATGCGAACACTGCGACCAAATGTATAAAACGCAGAAGTACTATTTGATTCATTTAAAAGGCCATTTAGACGGTACCGTGAAGTCTGTCAAACCCGGTACAAGGACAGGGGTTAGGGTAACTAGAAATCGTAAAGACGATACGACGGAATATTGGTGCGATAAGTGTaatctgaaattcaaaaagaaaaattatttattgttgCACGAACGGTACGTTCACATCGAAAAGAAACCCTGGTCGATCAGCGAAAACGCCGAAGGGCAATTTAAATGCGATCAATGCGACAgaagattttcttcaataacaGGACGTAATTACCATTGCAGACATATTCACGGTAAAGAATTCAATATGAATTTCAACGTTAAGTGTGATCATTGcggattaaaatttactaatcgTGTCTTTTATGCGAAACATCGAGCTAAATTGAACGGATCACCTACGTGTTACCTATGCTTCAAACAGTTCAACACCGAAGAAGAGTTGAATAACCATATCGATACCGATCACTGTACCGATTTGCCGTTCGTGTGCGATATATGTAAGAAAAGATTTGTAGCGTTGAAGAATCTGGACCATCATATTAGAGTAAAACATTTCAACGATAGACCATTCCAGTGCGACCTTTGTGACCATAGGGCAACTAGAAAAGACAGCTTGATGATACATATCAGAGGAGCGCACTTTGGAGAGAAACCTTACCAATGTGAAACTTGTGGAAAGAAATTCTCACAGAAAAATGACTGTCGAAAGCATCAAGTCAAACATGAACAAAAAGAGTGA
- Protein Sequence
- MIKIDVFGTDRPASGDKSTSLPLQQKPKKKKSTVCRICGKLYTNRSTYLNHLQKAHVSHRTTKSTKKSSTQPQQQQQSGQEQQQTEGESQPSQPARRKSTAPAAPTMCYKCGKIFKHPSSLRSHLKYIHAADSGAVKPLARPSKMCDLCGKLCKGNYFKAHMLKHSNPESAICKICGKVFAYSGTLRSHMKVCHNDNKPFKCTVCSTSFKRADYLRTHFRHKHRDIKMDGTYKCEHCDQMYKTQKYYLIHLKGHLDGTVKSVKPGTRTGVRVTRNRKDDTTEYWCDKCNLKFKKKNYLLLHERYVHIEKKPWSISENAEGQFKCDQCDRRFSSITGRNYHCRHIHGKEFNMNFNVKCDHCGLKFTNRVFYAKHRAKLNGSPTCYLCFKQFNTEEELNNHIDTDHCTDLPFVCDICKKRFVALKNLDHHIRVKHFNDRPFQCDLCDHRATRKDSLMIHIRGAHFGEKPYQCETCGKKFSQKNDCRKHQVKHEQKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -