Tper009293.1
Basic Information
- Insect
- Trionymus perrisii
- Gene Symbol
- -
- Assembly
- GCA_900050545.1
- Location
- FIZV01043162.1:12342-15925[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8 2.9e+02 2.8 1.0 2 16 65 79 64 81 0.72 2 13 0.00036 0.037 15.1 0.2 1 23 313 335 313 335 0.96 3 13 0.0013 0.14 13.3 4.6 1 23 343 365 343 365 0.98 4 13 6.7e-05 0.0068 17.4 0.3 1 23 372 394 372 394 0.97 5 13 2.1e-05 0.0022 19.0 4.6 1 23 400 422 400 422 0.98 6 13 0.0042 0.43 11.7 1.1 1 23 429 451 429 451 0.94 7 13 2.3e-05 0.0023 18.9 1.1 1 19 457 475 457 479 0.93 8 13 2.8e-05 0.0029 18.6 0.4 1 23 485 507 485 507 0.98 9 13 2.3e-06 0.00023 22.0 1.1 1 23 513 536 513 536 0.98 10 13 2.3e-06 0.00023 22.0 0.8 1 23 542 565 542 565 0.96 11 13 0.00053 0.054 14.6 2.2 1 23 571 593 571 593 0.98 12 13 1.5e-05 0.0016 19.4 0.3 1 23 599 621 599 621 0.97 13 13 0.0004 0.04 15.0 0.1 1 23 627 651 627 651 0.94
Sequence Information
- Coding Sequence
- ATGACAGCTGGTAAAGAAACAACGACTAACAACACGGTTTGTCTGATATGTGACGCCAGTATGGGTGTTTCAACGAGGAAATGCTGCCCCATATTCGAGCAAAGAGTGTCTACTTCAGATCGTACCATCGTTTCGGTGATCGGTTGCATACTCGGTGTTACTTTAACCCAAGAAGATGTACACAGTAACGTTGTTTGTAAGAAGTGTTTCAAATCTTGTAACGAATATGATGAACTCGAAGAAAGACTGCAAGAGCTGAAATTGGAGCTGTCGAGTAGTTATCAACGTTCATTAAAAAAACAAACTTCCGGTGGCAAAGATGCCGAGTCTGCGGCTATTGAAGAGAAAATCGAACAAAAGAAAGGCGATACTAgtcctaaaaaaagaaaacgaggaAGACCAAGTAAAAAAGATCAAGGCAACGATGAAGACGAGACCGCTAGTCTGATCGAATTGCTCGAAGGCGATAATGAAAACGCAGCTGGTGATACCACAATCCCGACCGCTGCTCCTGTTGCCGTTACAACTGCTGAAAATGGCAATGAGAACGCAGACGACGAAATCATCGAGTTAAATGGTGATGAAGAAGAAATAACTGGAGAAAATGATAACAACGATCAAGaagttaaaatcaaaatggaaGAAATGGAAGACGACGAGGAAGAAAGTAATGATAATGAGAACGACAATGACAACGATAATGAGGATGATGATGACAATGCTGACGACGAAGAGAAGAAACTAGCTAAGAAGAAACTTAAAATTGACAAGACGTctaaaaaagcgaaaaaaaccAAGGAAGTTTTAATACCGCAAAtgGTCGTTAGTCGCGAAGGCGAAATATACACATGCTTGATTTGCAACGTCGAGAACAAATTCAGCGCTGATGGTAGAGGAATTACTGCTCATGTGAAGGAAAATCACGATATACGTTTGTACATATGCGACGTCTGCGgtgtggaatttttcaaaagaagcgAGCTGTCCAAACATTTAGACGAGCACATTACCAACGAAGATGATACTTTTGAGTGCGATGTGTGCCATCGAacgttcaataattttagactTTATCGTgtccataaaaaaatgcataactCTTCGCAAAAGAATTACACTTGCGAATTATGTGGGAAAAGATTCGGTTCACGAAATTTATTGGAAGAACATAACAACGTGCATACCGGGGAAAGGCCGTATTGTTGTTCAGCCTGTGGTAAAAGTTTCACTTCGAAGTATACTCTGAAGTCGCATGAAAAAACTCACGAGGATAGACCACGTCCATTCTCCTGTATCAATTGTGGTAAAGCATTCCTCacccaacaaaatttaattcaccaCGAACGGATCCATTCCGGAATCAAGAATTACATTTGTCAAGAATGCGGAAAGTCATTCAACACGGCACGTAACCTGGAGACCCATTGTGTGATCCATACCGGTTACAAACCATTCATCTGTCGTCTTTGTGGCAAAGCTTTCAGTCGCAAACCAGAAATAAGAGATCACGAGCGTACTCACACTGGAGAAAAACCATATCAGTGTGAATTCTGCGGCGCTTCGTTCGGCCAAAGAAGTAACTTACAGTCGCATAAAAGATCTACTCATTACGACGATAAACGATACAAATGTACTGATTGTGGACGGGCATTCAAAAGACGACGTCTCTTAGATTACCACATGAAGGCAGCCCATACCGGAGAACGACCTTATAAATGCACTATTTGTTTAGCAACCTTCATTTATCcggaacatttcaaaaaacataagCTCATTCACACCGGAGAAAAACCCTACGAATGTGAAGTTTGTGGCAAAGCTTTCAACAGTAGGGATAACAGGAACGCTCATCGTTTCGTTCATAGCGACAAGAAACCGTACGAATGTCTGGTATGCGGACTCGGATTTATGCGAAAACCGTTACTTTACAATCATATGAATACTGCTGGTCATCAAAACGATACCATTGTCGTTAATCAACCGCGATTAACTACCGATGAGGTGATTACAAATATAggtactactactactactgcTGCTCCTATTCAACCGCAAATCGAGATGACCATTATTACCGACGAAGAAGGAAATCAGAAGCTTGTTCCTACGAATTCTTTGACTCAGGAAGTTGGTCCTGATCAGAAATTATATATACACGAAATGAAAGAACATATTATCATACCAGATGAACAGAATCCTAACCAACAACACAATCTTCATATCGTTATGGATGGTCAAGTTGAGGTTCAGTATGCATCGCAGCACGATTTAGGTACAGTGCATCATGTGCAAGCGGCCAACGCTATAGTTCCCGAAGATATACAAATCACTACGGCTGGTAATGCTGTCGTTGTGCCCCATTCTGAGAATAGCACCATCACATATCATCCAGAACCTGCTACCATTAAAACGGACAGTGGTCCTAtacaaattgttcaaattagATTATCCGAAGATAGCGAAGAACAAAAGCAATGgattaatttattacaagCTCAACATCAACCCTAg
- Protein Sequence
- MTAGKETTTNNTVCLICDASMGVSTRKCCPIFEQRVSTSDRTIVSVIGCILGVTLTQEDVHSNVVCKKCFKSCNEYDELEERLQELKLELSSSYQRSLKKQTSGGKDAESAAIEEKIEQKKGDTSPKKRKRGRPSKKDQGNDEDETASLIELLEGDNENAAGDTTIPTAAPVAVTTAENGNENADDEIIELNGDEEEITGENDNNDQEVKIKMEEMEDDEEESNDNENDNDNDNEDDDDNADDEEKKLAKKKLKIDKTSKKAKKTKEVLIPQMVVSREGEIYTCLICNVENKFSADGRGITAHVKENHDIRLYICDVCGVEFFKRSELSKHLDEHITNEDDTFECDVCHRTFNNFRLYRVHKKMHNSSQKNYTCELCGKRFGSRNLLEEHNNVHTGERPYCCSACGKSFTSKYTLKSHEKTHEDRPRPFSCINCGKAFLTQQNLIHHERIHSGIKNYICQECGKSFNTARNLETHCVIHTGYKPFICRLCGKAFSRKPEIRDHERTHTGEKPYQCEFCGASFGQRSNLQSHKRSTHYDDKRYKCTDCGRAFKRRRLLDYHMKAAHTGERPYKCTICLATFIYPEHFKKHKLIHTGEKPYECEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGLGFMRKPLLYNHMNTAGHQNDTIVVNQPRLTTDEVITNIGTTTTTAAPIQPQIEMTIITDEEGNQKLVPTNSLTQEVGPDQKLYIHEMKEHIIIPDEQNPNQQHNLHIVMDGQVEVQYASQHDLGTVHHVQAANAIVPEDIQITTAGNAVVVPHSENSTITYHPEPATIKTDSGPIQIVQIRLSEDSEEQKQWINLLQAQHQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01263822;
- 90% Identity
- iTF_01150645;
- 80% Identity
- -