Basic Information

Insect: Trionymus perrisii
Gene Symbol: -
Assembly: GCA_900050545.1
Location: FIZV01079180.1:18891-21414[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00016 0.017 16.2 0.7 1 23 92 114 92 114 0.96

2 12 0.0013 0.13 13.4 0.6 1 23 118 140 118 140 0.96

3 12 0.00017 0.017 16.1 2.4 1 23 147 169 147 169 0.98

4 12 0.027 2.7 9.2 0.9 3 23 178 198 176 198 0.90

5 12 5.9e-06 0.0006 20.7 5.2 1 23 204 226 204 226 0.97

6 12 0.00024 0.025 15.6 1.6 2 23 233 254 232 254 0.94

7 12 0.00078 0.08 14.0 1.3 1 23 259 281 259 281 0.95

8 12 2e-05 0.002 19.1 1.1 1 23 287 309 287 309 0.99

9 12 1.7e-07 1.7e-05 25.6 0.5 1 23 315 337 315 337 0.98

10 12 1.7e-07 1.7e-05 25.6 0.3 1 23 343 365 343 365 0.99

11 12 3.3e-06 0.00033 21.5 3.6 1 23 371 393 371 393 0.97

12 12 1.6e-06 0.00016 22.5 2.4 1 23 408 430 408 430 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00016	0.017	16.2	0.7	1	23	92	114	92	114	0.96
2	12	0.0013	0.13	13.4	0.6	1	23	118	140	118	140	0.96
3	12	0.00017	0.017	16.1	2.4	1	23	147	169	147	169	0.98
4	12	0.027	2.7	9.2	0.9	3	23	178	198	176	198	0.90
5	12	5.9e-06	0.0006	20.7	5.2	1	23	204	226	204	226	0.97
6	12	0.00024	0.025	15.6	1.6	2	23	233	254	232	254	0.94
7	12	0.00078	0.08	14.0	1.3	1	23	259	281	259	281	0.95
8	12	2e-05	0.002	19.1	1.1	1	23	287	309	287	309	0.99
9	12	1.7e-07	1.7e-05	25.6	0.5	1	23	315	337	315	337	0.98
10	12	1.7e-07	1.7e-05	25.6	0.3	1	23	343	365	343	365	0.99
11	12	3.3e-06	0.00033	21.5	3.6	1	23	371	393	371	393	0.97
12	12	1.6e-06	0.00016	22.5	2.4	1	23	408	430	408	430	0.97

Sequence Information

Coding Sequence: atgcaaactGGAAGTGGAAGACATGGAAGACAAATCTTGAATAGCCCTGGCTTGGCTATACAGCTATACAGTCCTAAATGGGAATGTGCTGATGAAGAATCGTTGGAAAACGAATTATTCATCGGAGTCGAGTCCGAGGATTTGGAAGTGGACGAAATTAGGGAAAACTCGAGAACTTCGTCACAAAACGATGACATCGATGacgaaaagttgaattttcaactatccATCAGAaacaaggtgaaaaaattattagattcttcaaaaaacaagcacgtttgtaaaatttgcaagAAAACTTTCAACGAAGATACCGCACTAGAAAGACATGCTTTGAtccatgcaaaaaaatatttttgcgttCAGTGcggagaaatttttggaaatcagaCCGACTTAGTGAATCACGAACAACATCATATCgcggaaaaaagtaaatatttttgtgccaTATGCCacaggtatttttttgcgCGAGGGAACCTTAACGTGCATATGAAGACGCACGAAGGTAAACCAAAAATACACGCTTGTATACAATGTAACATGTCTTTCGCGAACGAAAAACTTTTAGCGAAACataacaaaattcattttgctgAAAAGTCGTATACGTGCCACGATTGCGGTAAAAcgttttatagaaaaaaacacataataCGTCACGTCACCGTTCATCAAAATCAATCGAAACTTGAGTGTAGATTCtgtcaaaaatcattcgtTCATCAAAGTAGCTTATCCGTACACGAGTTATTGCACTCGGATGTTACTCACACGtgtaaatattgttttcgaGATTTTCCCCTGCAGTCTAATTTAATAGTTCATGAAATCCAGCATACGAGCAAGTCCCCCTTTCAGTGTccgttttgtaaaatttcattcgtcgAAAAGAAAACACTTATACTTCATTTGCGGAAGCATCTCAATGAAAAACCTTACTCTTGCGACATCTGCAATAAAACCTTCATCCGCCAAGCAGCTTTGATCAAGCATCAGAAACTTCACGATGAAACTAGACCGTATAAATGTCCAAAATGCGACAAATCATTTCCGTTGAATGTTACGCTGATATCTCACATGCGAATTCACACCAAGGACAGACCTTACGCTTGTGATCGTTGCGACAAAAGATTCAAACAGAAGAAAACTCTCCGCAAGCATACGAAAATTCATTTAGAAGCAGAAAAAAGTACTCAAGATGATAATCAAAATGTGCACAGCTGTACTCagtgtgataaaaaattctatagagCTTGGTCGTTGGAACGACACATGCTAATGCATGCgccaaaaaaaactgaacaatttATAAGCGGTTTGAAATTACGGTTTAAATCACTGCTACATTCTTTCGAAGTGAAGCAAATGAATAGTGATTCTACCTCGCATATTAAGTACAACATGGACCAAAGCTCATCGATGGCTTACGAATATGATAATTTGGAGACCAATGAATTTCCTAttcctgaaattaaaatggaacCAAAAGAAGAGGCGATTGCAATAAAGACGGAACCGGTTGATAGCGATGATGATGACGACTGa
Protein Sequence: MQTGSGRHGRQILNSPGLAIQLYSPKWECADEESLENELFIGVESEDLEVDEIRENSRTSSQNDDIDDEKLNFQLSIRNKVKKLLDSSKNKHVCKICKKTFNEDTALERHALIHAKKYFCVQCGEIFGNQTDLVNHEQHHIAEKSKYFCAICHRYFFARGNLNVHMKTHEGKPKIHACIQCNMSFANEKLLAKHNKIHFAEKSYTCHDCGKTFYRKKHIIRHVTVHQNQSKLECRFCQKSFVHQSSLSVHELLHSDVTHTCKYCFRDFPLQSNLIVHEIQHTSKSPFQCPFCKISFVEKKTLILHLRKHLNEKPYSCDICNKTFIRQAALIKHQKLHDETRPYKCPKCDKSFPLNVTLISHMRIHTKDRPYACDRCDKRFKQKKTLRKHTKIHLEAEKSTQDDNQNVHSCTQCDKKFYRAWSLERHMLMHAPKKTEQFISGLKLRFKSLLHSFEVKQMNSDSTSHIKYNMDQSSSMAYEYDNLETNEFPIPEIKMEPKEEAIAIKTEPVDSDDDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00194604;
90% Identity: -
80% Identity: -