Tper025895.1
Basic Information
- Insect
- Trionymus perrisii
- Gene Symbol
- -
- Assembly
- GCA_900050545.1
- Location
- FIZV01048189.1:1094-5623[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00033 0.034 15.2 1.3 1 23 350 372 350 372 0.98 2 19 0.00048 0.049 14.7 1.4 1 23 377 399 377 399 0.97 3 19 0.006 0.61 11.3 1.0 2 21 410 429 409 430 0.93 4 19 0.087 8.8 7.6 0.8 1 23 435 458 435 458 0.95 5 19 0.21 22 6.4 0.1 2 23 499 519 498 519 0.79 6 19 4.6e-07 4.7e-05 24.2 0.9 1 21 525 545 525 546 0.95 7 19 0.00024 0.025 15.6 0.6 1 23 553 575 553 575 0.98 8 19 0.00013 0.013 16.5 0.3 1 23 585 608 585 608 0.98 9 19 0.06 6.1 8.1 0.7 2 23 617 639 616 639 0.90 10 19 0.00014 0.014 16.4 1.0 1 23 647 670 647 670 0.98 11 19 0.0068 0.7 11.1 0.2 2 23 702 724 701 724 0.94 12 19 0.0012 0.12 13.5 0.1 1 19 746 764 746 766 0.94 13 19 1.6e-06 0.00017 22.5 1.4 1 23 776 798 776 798 0.98 14 19 0.00025 0.025 15.6 0.2 1 20 807 826 807 828 0.95 15 19 0.26 27 6.1 0.5 3 23 832 853 831 853 0.93 16 19 0.003 0.31 12.2 2.1 1 20 897 916 897 917 0.96 17 19 8.3e-05 0.0085 17.1 4.0 1 23 925 948 925 948 0.97 18 19 0.0037 0.38 11.9 1.7 1 23 953 975 953 975 0.95 19 19 0.4 41 5.5 1.0 5 21 984 1000 983 1001 0.92
Sequence Information
- Coding Sequence
- ATGATTTCTGTTGACTCGATTCTATCTGAAGAACACGATATTAGCAAACTAAATGATCTTTGTCGATTGTGTGGACATTCGAAAGAAACTTCCGCGCTGATTTTTGACGACATTCACCAACAGAATTTCGACAACGTTATTAATATCTACTTTAAGGATGAATTTCaaATTAATCGGGATGATATCCtgcctctaaaaatttgtcaaacttGTTTAACGGCTGTGGAATCGTGGAACCAGTTTTACATCAATTGTGTctgtacaaatgaaaaatttattcagctggttgaaaaatttaatttgaagaaagaagTAGACAAAAAACCAAATGATATGATGAATACCGATATCGAAGTGATCGAGGTTAGTGTGGGGGACGAGAATTATGactttttcaatgatccagTCAATACCCACCagtttgatatttcaaaacttgaatttgCCCAGTCTATTCCCGcttctgataattttcaagatttcgatAATGTagaaaatatcactttttccGAAGATACTGATATGAAGGATGCCGATAACCAATTATCAGCTAATCAAACAGAGTATAACGATGGAAAAGAAAGTACCAATAGCGTCGTCTTCGACGTCGGCGACAATTACGGTGACAGTAAtgtcgacgacgacgacgacgcctTAAGCATCGATGAAGCCGACATCAACGATTCAGATGGCGTGGAAGATGATAGTATATTGTCTCCGGCGCCACCGTCAACCACCACTGATGTATTCGATGAATTACAAACCAAGGACGACGATCACCCTCTTAGATGCACCTTATGTTCAAATATCGCCTTTAGTGGCTGTTTAATCGGCGACCATTACGTTTGCGCAAATTGTTGCAATGTAAAACTAGAATCGAAGGACGACGATCAGTGGAATTGCAACGAAGACCCGACTACAGTCGCCAGCGGCGATCAATTAGATAATGCCGTCACATCTCTCAATTTCTCCGAAAAAGTAACTGCAACGACGTTGGATGAGAGTGATGTTGATTTTACAGCTGTGAAAACTTTACCCGATGAGAGATACCAGTGCGCACTTTGTAACAAAGTCTACCGCAAAAAAAAGAGTATGATAAATCACGTGAATAAccataataaaaaagtattcgcTTGCCAGGTATGCAATGGAAATTTTCGTACGCTCGAGCAGTTGAAAACCCATAGAAAAAGACACGTACGTAAATCGATAAATAATACGTTAATATATTGCGAAGTTtgtaaaaagtatttcaaaactaaaaaaggaTTCGCCTACCATCAGCAAAAAATCTGTATCCAATACAAATGTTACATTTGTGACGAAAAATTCTTGGTACATTCGGTGCTGATGGATCACGTGCGTAATGTTCACGACGATACGAATAAAGTAACCCCAGGTGTTGTTGCGACGCCAGCAGATGACACCGAAACCATGTCTTTGGTCATGGCGGAACAGACCGCGCCAGCCAGCGATAATGAAACCATAATGAGCGTTTGTCCAATTTGTCACAAGGTAGTTACCCAGGCGGTGCTGCCACGTCATATGATTCTGCACTCGAAGGATAAACCATTCACCTGCGATATGTGCGGTAAATCGTTCAAAAGGAAGCATTCCCTTCAGGATCATATCATGATCGAGATGGGCATGAAGAACTACGTTTGCGATATCTGCGGCATGAAGTTTCTCAAGCAAGGTTACCTTAATAAGCACGTTCGATATCATCAGCTCAACAACGGCGAATACCAAGGCTTCCGGTGTGAAATGTGTGGCAAGAGGTTTCCGGAAAAATGGCGCTTAGGCGTGCATCAACGATCGGTCCACAAAGGCGGTCGATTTTCGTCCTGCAAATGCGACATCTGCGGTAGCATGTTCGCCGAAAGGTGGATGGTGCGGAGACACAAGGCGCAGGAACACAATGGCGAAGAATTCAGAGAATACCAATGCGACGTTTGCGGTAAGAAATTCCAAGAGAAGTGGATGATCAGGTCGCACCAAAGGAGTACCCACAAAACCGGCGTTAAGAAGCTGTACTGCGAGTTATGCGGACGTAGCGATCATCTGCAGAAAGATTGTACCCATAGGCACGCCCTTCAAGAGGTATCTTGCGAATTGTGCGGTGAACAATTCCAGTCGAATTTTGCTCTCAAGGAGCATGTCACTTCGATGCataatttcgttcaattcaataaatttgaaagtttcgaAGAGACTTTGTCGATTGAAAACGTGCTGCATATATGCGCAGGATGCGGTAAACAATTCGCCAGCAAGCAGCTACTAAGACAACACGAGGTCGCGGCCAAGTGCCGTAATGACCTTAAGTACGAATGCGAAGAATGCGGCAAGATATTCCATTCCAAGTCCAGCCTCAGTAATCACCTCATGAGTCATAAGAAAGCCGCCATTGCTACTATGTTCAGGTGCGAATTCTGTAAGAAAGAGTTCAGAAATAGCGAAGCCCTCGACGTCCATATGTCCGGTGATAAATTATGCCTTATTTGCGGTAAAGTCTACCCTTGCGACGATCAGCTGCGAAATCACGTGTATAAAGAGCATAACGAAGACGAAGACACTCGTCCTCCGGCAAAAAAACCGCGCGACTCGATCGctctaaaaaatgacgaatggTCGCAAGATGAAACCGAAGCGACCAAGCCGTCGAGCGAAGCGCAGCCGGAAAAACCGTTCGAGTGCCGATTatgccataaaaaatttgcacgcAAACAAGCGATGAAAAATCACCTCTATGCAGAGCTGAATTTACGAAGACACGAATGCGAATTTTGCGATAAaagttataattattattcgcATTTGAAAGAGCATATCATCACGAATCATGGCGAGAAAGAGTACGCATGCGTTCACTGTGGTAAAGATTTCCCAACGAGGAAACGATTCAGAGATCATGTGACGTTGCACTTGGATGATAAACCGTACCTTTGCGTGTGCGGATTATCGTTTAAACTCAATAGATATCTGAGTAaacataagaaaaaatgtaaagctaccataaaaaaagaagtcgaGTAG
- Protein Sequence
- MISVDSILSEEHDISKLNDLCRLCGHSKETSALIFDDIHQQNFDNVINIYFKDEFQINRDDILPLKICQTCLTAVESWNQFYINCVCTNEKFIQLVEKFNLKKEVDKKPNDMMNTDIEVIEVSVGDENYDFFNDPVNTHQFDISKLEFAQSIPASDNFQDFDNVENITFSEDTDMKDADNQLSANQTEYNDGKESTNSVVFDVGDNYGDSNVDDDDDALSIDEADINDSDGVEDDSILSPAPPSTTTDVFDELQTKDDDHPLRCTLCSNIAFSGCLIGDHYVCANCCNVKLESKDDDQWNCNEDPTTVASGDQLDNAVTSLNFSEKVTATTLDESDVDFTAVKTLPDERYQCALCNKVYRKKKSMINHVNNHNKKVFACQVCNGNFRTLEQLKTHRKRHVRKSINNTLIYCEVCKKYFKTKKGFAYHQQKICIQYKCYICDEKFLVHSVLMDHVRNVHDDTNKVTPGVVATPADDTETMSLVMAEQTAPASDNETIMSVCPICHKVVTQAVLPRHMILHSKDKPFTCDMCGKSFKRKHSLQDHIMIEMGMKNYVCDICGMKFLKQGYLNKHVRYHQLNNGEYQGFRCEMCGKRFPEKWRLGVHQRSVHKGGRFSSCKCDICGSMFAERWMVRRHKAQEHNGEEFREYQCDVCGKKFQEKWMIRSHQRSTHKTGVKKLYCELCGRSDHLQKDCTHRHALQEVSCELCGEQFQSNFALKEHVTSMHNFVQFNKFESFEETLSIENVLHICAGCGKQFASKQLLRQHEVAAKCRNDLKYECEECGKIFHSKSSLSNHLMSHKKAAIATMFRCEFCKKEFRNSEALDVHMSGDKLCLICGKVYPCDDQLRNHVYKEHNEDEDTRPPAKKPRDSIALKNDEWSQDETEATKPSSEAQPEKPFECRLCHKKFARKQAMKNHLYAELNLRRHECEFCDKSYNYYSHLKEHIITNHGEKEYACVHCGKDFPTRKRFRDHVTLHLDDKPYLCVCGLSFKLNRYLSKHKKKCKATIKKEVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00194611;
- 90% Identity
- -
- 80% Identity
- -