Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.011 8.1 7.2 0.2 17 43 28 51 17 52 0.85

2 8 0.0036 2.6 8.7 0.2 18 40 58 77 53 83 0.90

3 8 0.16 1.2e+02 3.5 0.4 19 43 111 132 108 133 0.84

4 8 0.09 66 4.2 0.6 18 38 139 156 134 161 0.80

5 8 0.0011 0.78 10.4 0.5 16 43 182 206 174 207 0.88

6 8 0.015 11 6.8 0.0 14 36 209 231 207 232 0.84

7 8 0.1 76 4.0 0.5 19 43 258 279 247 280 0.80

8 8 0.29 2.1e+02 2.6 1.9 13 43 281 308 278 309 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.011	8.1	7.2	0.2	17	43	28	51	17	52	0.85
2	8	0.0036	2.6	8.7	0.2	18	40	58	77	53	83	0.90
3	8	0.16	1.2e+02	3.5	0.4	19	43	111	132	108	133	0.84
4	8	0.09	66	4.2	0.6	18	38	139	156	134	161	0.80
5	8	0.0011	0.78	10.4	0.5	16	43	182	206	174	207	0.88
6	8	0.015	11	6.8	0.0	14	36	209	231	207	232	0.84
7	8	0.1	76	4.0	0.5	19	43	258	279	247	280	0.80
8	8	0.29	2.1e+02	2.6	1.9	13	43	281	308	278	309	0.77

Coding Sequence: CCATTACGGCACAATGCTGGTAAAACTCAGTATTACGGACAACGATCTTGGATCCAAGATTGCGAAAAATTACGGGACGTGTTTCCATGCTCCGGTTGTCGTAGCGTATTTAAGTATAAGCGTAACTTGATAGCTCATTTGAAAACCGAATGTGGCAGAAAGAGATTATTTAAATGTGATGTatgttttaaagaattttcctaTAAGCATAATCTAGAGAGGCATATGGttgCAGAAGTTCTACGTCAACAGGATGAAGCGAATTTGTATTGCGGACGATCGCAGCAGTGGGTAACCAgtagtttggaaaaatcaccAGATTTGTTTTCGTGTCCAGATTGCGACCATATTTTCAAGTACAAACGTAACATGACAGCACATTTGAAAACGGAATGTGGCAAGAAAAGATTGTTTAGATGTGACCTGTGTTTGAAAGAATTCACTTACAAACATCATTTAAGAACGCATATGGgAGCTCTAGAAATGAATGATATTCATGGACCACCGCAATGGGCCACTGAATATAAAGCAAAATCGCCGGAAGTTTTCGTCTGTCCTAAATGTAACAGTATATTTAAGTACAAACATAACTTGATACCTCATTTGAGAGCCGAATGTGGCAAGAAAAAGCTATTTAAGTGCGATATATGTTTCAAAGAATTCAGTTACAggcaaaGCATTCCACGTCTTCGAAATAAGCCAAAGGAGCAACTTCAGTGGATCTCTGGTGCCTACACGTTTGGCAAGTCGCAAGAAGAATTGAGATTTCCATGTCCTAATTGTAGCAGTATTTTCAAGTACAAGGGTAACTTGACGACTCATTTGAAAACCGAATGTGGCAAGAAGAAATCTTTTAAGTGCCAAGTTTGCTTTAAAGGATTCAATTATAAGAAAAGTTTACAAACTCATATGGCTCTTGTGCATAAAATATTGTTCCTGCAGTGA
Protein Sequence: PLRHNAGKTQYYGQRSWIQDCEKLRDVFPCSGCRSVFKYKRNLIAHLKTECGRKRLFKCDVCFKEFSYKHNLERHMVAEVLRQQDEANLYCGRSQQWVTSSLEKSPDLFSCPDCDHIFKYKRNMTAHLKTECGKKRLFRCDLCLKEFTYKHHLRTHMGALEMNDIHGPPQWATEYKAKSPEVFVCPKCNSIFKYKHNLIPHLRAECGKKKLFKCDICFKEFSYRQSIPRLRNKPKEQLQWISGAYTFGKSQEELRFPCPNCSSIFKYKGNLTTHLKTECGKKKSFKCQVCFKGFNYKKSLQTHMALVHKILFLQ

Sequence clustering based on sequence similarity using MMseqs2