Tper004434.1
Basic Information
- Insect
- Trionymus perrisii
- Gene Symbol
- -
- Assembly
- GCA_900050545.1
- Location
- FIZV01048323.1:2114-3934[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-09 1.8e-06 28.1 0.0 2 38 19 54 18 56 0.95
Sequence Information
- Coding Sequence
- ATGGCGAGAAATTACGTTTCGGACCCTCGaggtaaaaaataccaaaaacaTTCGAAAGATGAGTTTGATAAGGCTATTGCTGCGATCAATCGAGGTAATTCTATCAAGCAAACGGCAAGAGATTTCAACATTCCTTATACAGTTCTTTATAGGCATTTTAAAGACCCTCAAATTCGACCTCAAGGTGGTCAAACAGCATTGCTCAAAGACGAGGAAACACTTATCGTGCAGCGGCTCCTAATTTGCGCTCAATGGGGGTACCCATTAGACAGTTTCACATTGCGCTTATTTATCAAAAGTTACCTGGATACAAGAGGAAAAACGATCAAAAGGTTTAAAAACAATGTGCCTGGCATAGAATTTGTGCGCGGTTTTTTAACCAGGCATAAAGAGAAACTGGCTTCAAGGCTTTGCCAGAACATAAAGAGGTCTCGTGCGCAGATATCTCGTGCTGTTTTACAGGAGTATTTCGATCATCTAAAAAAGGAATTAGAAGACATTCCTTCTCCGTCGAACATTGTGAACTATGACGAGACTAATTTGAGTGACGATCCCGGACGAAAAAAGGTAATCACGAAGAGGGGTTGCAAATACCCGGAAAGAGTGATGAACTCTTCTAAAACAGCAACATCTATAATGTTTTCTGCATCAGCCGATGGTACTTTATTGCCTACCTACGTCGTATATAAAGCTACAAACTTGTACTCAACTTGGATAGAAAATGGCCCACCAAAAACTCGTTATAATCGCACCAAGTCAGGGTGGTTTGATTCACAATGCTTTGAAGAttggcttgaaaaaattatcgtttcgtattttaaaaatcttcaagggaataaaatcataattggTGATAATCTCTCCTCACACTTAACAATGAATTCCGTGAAAATGTGTAGCGATAACAACATTAAAATGGTATTCCTGCCATCGAACTCCACTCACCTCACTCAGCCACTCGATGTGGCATTTTTTCGGCCACTAAAGATCagctggagaaaaattcttactgCATGGAAGTTGGGGGATGGTAAACGCGAAAGTTCAGTGCCCAAAGACGTATTTCCAAGATTACTGAAGAAGTTATTGGCTGACATAAATCCGAAAGCATCTGAAAACATCGTTGCTGGATTCAAAAAATGCGGAATTGAACCATTTGATCCCGATGGAGTTATAAAACGTGTCCCATCAACTGCAAATATTGAAGAAGAAGCAATGTGTGTGGATAGCTCGTTGATTGAGCTTCTTGCGGAAATGAGAGGCGTTTCTCAAAGTACGCCaatacgaaaaaagaaaacgaaaataaatgtaGTGCCAGGAAAAAGCGTTTCAACATTGAGCGACGAAGACGAATCTCACGATTCCTCAATAGACGAACCCGAAGGAAATCAAATTAacctcgaaaatgaaaatattccagAGGATAAAAGCTCGTCCGAAAATGAAAGCCCATCTCCGTCTGATGATGAAAATCGCGAAAGTGAAACCAGCGAGTCATCcaatgaagaagaaaacaacGAAGCTGGCTGCTCTACAACAGATTATGAGCCATTTGTACTCAAAGAAGATGATTTcataattgttaaatttaaaagtaataaacGAGAAAGGAGATTCATCTGTCAGGTGATTCAGGTAAAAGGTAACTCTATAAGAGTAAAATGTATGAGGAAACGGGTAGGAAAATTTGTTGTGTTTGTTTTTCCGCCGGTAGATGATATTTGTGATGTGAAAGCGAAAGATGTAGAAAGGAGGATTGCTCCTATGAGCTGTTCTCGAGGACAGTATAAGTTCTTAATCGATGTTAGTCATAtagagtaa
- Protein Sequence
- MARNYVSDPRGKKYQKHSKDEFDKAIAAINRGNSIKQTARDFNIPYTVLYRHFKDPQIRPQGGQTALLKDEETLIVQRLLICAQWGYPLDSFTLRLFIKSYLDTRGKTIKRFKNNVPGIEFVRGFLTRHKEKLASRLCQNIKRSRAQISRAVLQEYFDHLKKELEDIPSPSNIVNYDETNLSDDPGRKKVITKRGCKYPERVMNSSKTATSIMFSASADGTLLPTYVVYKATNLYSTWIENGPPKTRYNRTKSGWFDSQCFEDWLEKIIVSYFKNLQGNKIIIGDNLSSHLTMNSVKMCSDNNIKMVFLPSNSTHLTQPLDVAFFRPLKISWRKILTAWKLGDGKRESSVPKDVFPRLLKKLLADINPKASENIVAGFKKCGIEPFDPDGVIKRVPSTANIEEEAMCVDSSLIELLAEMRGVSQSTPIRKKKTKINVVPGKSVSTLSDEDESHDSSIDEPEGNQINLENENIPEDKSSSENESPSPSDDENRESETSESSNEEENNEAGCSTTDYEPFVLKEDDFIIVKFKSNKRERRFICQVIQVKGNSIRVKCMRKRVGKFVVFVFPPVDDICDVKAKDVERRIAPMSCSRGQYKFLIDVSHIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -