Tper022237.1
Basic Information
- Insect
- Trionymus perrisii
- Gene Symbol
- -
- Assembly
- GCA_900050545.1
- Location
- FIZV01005617.1:73-2271[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-10 1.1e-07 32.0 0.1 4 45 14 54 12 54 0.95
Sequence Information
- Coding Sequence
- ATGGCACCTCCCAGACCGAGGAGAAATTATTCTTCCAGCCAGATGGAAAAGGCGTTATTTGAAGTATCGAagggaacaaaatttaaaacagcaGCTAACAAATATGGTATCCCACGCACCACACTCAAGGCAAGATACGaaaacaaatataaaaaagaaagaatggGCCCCGAAACTAGCTTACCGCTcacaattgaaaatgatttggtGACTTGGATAACCGAATGTAGTAAATCGAATTTTCCTGTAACTCGTGATCAGATCCGTGATTCCGTCAAAATGATCGTAACGAAATGTaagattaaaacaaattttaaaaataaacgaccTGGTTACACTTGGCTGAAACTGTTTCTCCAGCGACATCCCTCGATAACACTTCGTACCTCTCAAGTGCAATGTAAAGTTCGAAAGGAGGTAACGCAAGAGAAACTTGATCTTTGGTTACAAGAAGTGAAAAACTACATCGAAgcagaaaaattggaagaagtCATCGCCGATGAAGCGCTTTCAACAAAACAATCCAAAAATAAACACGGTGAACCTGAAACCAATCTGTCATGGTATGAAAagtgtcgatttttaaaattcatcgaaaacgAAGCTGGAGCAGACAAAATTTCGTCGTTTAAAGAAGATAAATTCGAAACTGATCCAATTTTGtacagaatttggaaaaaattacgccaGaccGAGGTTCGTGAAGTGGACAACGAGAACGAAACTACAGATTCTAGTATAAATGATGCAACTATCGACGCTACGAATGATACAACTATCGACGCTACGATTTATACAACTATCGACGCTacgaattcgattttttatacaGAAGATACAAATACGAGTTTGGATAATACCTCGATTACAGTTACACCGGCAATTCAGGTCCCTAACGCTGAGAGTTCGAGAACAGATTCTGCATATACGAGTTTGGTTAATACGTCGTCGTTGATGATATCGACTATGGATATTCTGGATCCTATACCCGGTGCGAGTTCAACAGATGTCGATGTCAATATGCCTGTTACTAGTACTCCAATAAAAGATTCGgaaaagAGCAACGGTAGTAAAAAAGTAAACGTTTCAAGTCCcatcagaaaaatattacattggCCGGAagctaaaaaaacaaaaaccaatcGAAATCGAACTGAAACACAAAAAGCTCCTTTTGCCATTACTGGGAaagaatggagaaaaattatgaaagaaaGGCAGATGGCCAAGGAAAAATTAGAACAGGATAAGCTTGAAAGGAAACGCGTGCGAGAAGAAAAGAAGAGAGAAaaggaattagaaaaataa
- Protein Sequence
- MAPPRPRRNYSSSQMEKALFEVSKGTKFKTAANKYGIPRTTLKARYENKYKKERMGPETSLPLTIENDLVTWITECSKSNFPVTRDQIRDSVKMIVTKCKIKTNFKNKRPGYTWLKLFLQRHPSITLRTSQVQCKVRKEVTQEKLDLWLQEVKNYIEAEKLEEVIADEALSTKQSKNKHGEPETNLSWYEKCRFLKFIENEAGADKISSFKEDKFETDPILYRIWKKLRQTEVREVDNENETTDSSINDATIDATNDTTIDATIYTTIDATNSIFYTEDTNTSLDNTSITVTPAIQVPNAESSRTDSAYTSLVNTSSLMISTMDILDPIPGASSTDVDVNMPVTSTPIKDSEKSNGSKKVNVSSPIRKILHWPEAKKTKTNRNRTETQKAPFAITGKEWRKIMKERQMAKEKLEQDKLERKRVREEKKREKELEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -