Tper001208.1
Basic Information
- Insect
- Trionymus perrisii
- Gene Symbol
- -
- Assembly
- GCA_900050545.1
- Location
- FIZV01038155.1:1-1196[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-10 8.1e-08 32.5 0.0 3 38 140 175 138 178 0.93
Sequence Information
- Coding Sequence
- GTAGCTAGTAAGAAGTTCGACATTGTAGCCAAAAGAATATTTATAGAAGGTGGCGCTGAAGTAGAAGAAGATGATGTAAAAGTTCTACGTGATAATGATCGGCTGTTTGTGTCCTCCGGAGAACCATTTATTAggaataagaaaaatgaaccTAGTGATCTTGGCGAAGGAAATGAGAGTTCGTTATTTCCGAAGTATATCTCtgtgaaacaattttccattcaTAAGACTGCTTATATAGCTTGGACAAATACTGAAAACTTGAGAAACGTGTTCCGATCTACTCTGCGGGATATAAAGTATTATTTTAAGACCTACTGCCTTTCAATTCCAACTGAAGACATTTTGAAAGATATAAAGGAAAATGAGATGCCCAGTGAATATGTTCGGAAGACGGAGAAAGGTAAATGGACGGTTGAGACGATGCTGAAAGCGTTGAATGCGGTCAATAAAGGTGAAATGTCTATCAGAGAAGCAAGTCAACACTATAAGATACCGGAATTGTCAATTCGAAATCGAAAGAAGAAGCAATCTTGTGCTCCACCGCGACTTGGATGTCCCCCTGTGTTCACCGAAGAGCAAGAAAAGGAAATCAAAGACTATGTTCTTATTCTTGCAGATAGATATTTCGGTCTGACGCCTCGTAAATTACGAACAATCGCGTATGAAGCGGCGGAAAAGAGAAATGTTCCCAACAAATTTAAtccggtaaaaaaaattgcggggAAAGATTGGCTCGCTAATTTTGTACGACGAAACCCCGAAATGGTAGTAGTATAGAACTTAACTACcactttttttgccaaaatcccCTTTAAAACGATCTAAATTAG
- Protein Sequence
- VASKKFDIVAKRIFIEGGAEVEEDDVKVLRDNDRLFVSSGEPFIRNKKNEPSDLGEGNESSLFPKYISVKQFSIHKTAYIAWTNTENLRNVFRSTLRDIKYYFKTYCLSIPTEDILKDIKENEMPSEYVRKTEKGKWTVETMLKALNAVNKGEMSIREASQHYKIPELSIRNRKKKQSCAPPRLGCPPVFTEEQEKEIKDYVLILADRYFGLTPRKLRTIAYEAAEKRNVPNKFNPVKKIAGKDWLANFVRRNPEMVVV*NLTTTFFAKIPFKTI*I
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -